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1FKM

CRYSTAL STRUCTURE OF THE YPT/RAB-GAP DOMAIN OF GYP1P

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsMPG/DESY, HAMBURG BEAMLINE BW6
Synchrotron siteMPG/DESY, HAMBURG
BeamlineBW6
Temperature [K]100
Detector technologyCCD
Collection date1999-12-13
DetectorMARRESEARCH
Wavelength(s)0.9790, 0.9795, 0.9200
Spacegroup nameP 65 2 2
Unit cell lengths74.060, 74.060, 277.753
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution6.000 - 1.900
R-factor0.199
Rwork0.199
R-free0.22500
RMSD bond length0.005
RMSD bond angle1.100
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.000
High resolution limit [Å]1.9001.900
Rmerge0.0940.242
Total number of observations237598

*

Number of reflections33503
<I/σ(I)>14.4
Completeness [%]91.297.1
Redundancy74.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.520

*

PEG MME 5000, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 18K
1VAPOR DIFFUSION, HANGING DROP7.520

*

PEG MME 5000, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 18K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoirPEG5000 MME5 (%)
21reservoirspermine-HCl5-10 (mM)
31reservoirTris20 (mM)
41dropprotein10 (mg/ml)

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PDB entries from 2024-05-15

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