1F8Y
CRYSTAL STRUCTURE ANALYSIS OF NUCLEOSIDE 2-DEOXYRIBOSYLTRANSFERASE COMPLEXED WITH 5-METHYL-2'-DEOXYPSEUDOURIDINE
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 296 |
Detector technology | AREA DETECTOR |
Collection date | 1992-01-01 |
Detector | SDMS |
Spacegroup name | I 21 3 |
Unit cell lengths | 149.600, 149.600, 149.600 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 5.000 - 2.400 |
R-factor | 0.16 |
Rwork | 0.160 |
R-free | 0.21800 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.560 |
Data reduction software | SDMS |
Data scaling software | SDMS |
Phasing software | X-PLOR |
Refinement software | X-PLOR |
Data quality characteristics
Overall | |
Low resolution limit [Å] | 100.000 |
High resolution limit [Å] | 2.400 |
Rmerge | 0.075 |
Total number of observations | 101311 * |
Number of reflections | 21897 |
Completeness [%] | 93.0 |
Redundancy | 4.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.4 | 296 | Ammonium Sulfate, Citrate Buffer, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 296K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 40 (mg/ml) | |
2 | 1 | drop | ammonium sulfate | 5 (%sat) | |
3 | 1 | drop | citrate | 0.05 (M) | |
4 | 1 | reservoir | ammonium sulfate | 5 (%sat) | |
5 | 1 | reservoir | citrate | 0.05 (M) |