1F8Y
CRYSTAL STRUCTURE ANALYSIS OF NUCLEOSIDE 2-DEOXYRIBOSYLTRANSFERASE COMPLEXED WITH 5-METHYL-2'-DEOXYPSEUDOURIDINE
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU |
| Temperature [K] | 296 |
| Detector technology | AREA DETECTOR |
| Collection date | 1992-01-01 |
| Detector | SDMS |
| Spacegroup name | I 21 3 |
| Unit cell lengths | 149.600, 149.600, 149.600 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 5.000 - 2.400 |
| R-factor | 0.16 |
| Rwork | 0.160 |
| R-free | 0.21800 |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.560 |
| Data reduction software | SDMS |
| Data scaling software | SDMS |
| Phasing software | X-PLOR |
| Refinement software | X-PLOR |
Data quality characteristics
| Overall | |
| Low resolution limit [Å] | 100.000 |
| High resolution limit [Å] | 2.400 |
| Rmerge | 0.075 |
| Total number of observations | 101311 * |
| Number of reflections | 21897 |
| Completeness [%] | 93.0 |
| Redundancy | 4.6 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 5.4 | 296 | Ammonium Sulfate, Citrate Buffer, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 296K |
Crystallization Reagents in Literatures
| ID | crystal ID | solution | reagent name | concentration (unit) | details |
| 1 | 1 | drop | protein | 40 (mg/ml) | |
| 2 | 1 | drop | ammonium sulfate | 5 (%sat) | |
| 3 | 1 | drop | citrate | 0.05 (M) | |
| 4 | 1 | reservoir | ammonium sulfate | 5 (%sat) | |
| 5 | 1 | reservoir | citrate | 0.05 (M) |






