1E7L
Endonuclease VII (EndoVII) N62D mutant from phage T4
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | EMBL/DESY, HAMBURG BEAMLINE BW7B |
Synchrotron site | EMBL/DESY, HAMBURG |
Beamline | BW7B |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 1998-04-15 |
Detector | MAR scanner 345 mm plate |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 58.240, 35.830, 91.930 |
Unit cell angles | 90.00, 103.93, 90.00 |
Refinement procedure
Resolution | 35.000 - 1.320 |
R-factor | 0.145 |
Rwork | 0.146 |
R-free | 0.18600 |
Structure solution method | MIRAS |
RMSD bond length | 0.010 |
RMSD bond angle | 0.019 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | SHARP |
Refinement software | REFMAC |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 27.000 | 1.370 |
High resolution limit [Å] | 1.320 | 1.320 |
Rmerge | 0.075 * | 0.301 * |
Total number of observations | 243182 * | |
Number of reflections | 81068 | |
<I/σ(I)> | 9.9 | 2.3 |
Completeness [%] | 96.5 | 88.9 |
Redundancy | 2.99 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.5 | 4 * | HANGING DROP VAPOUR DIFFUSION DROP SIZE: 1 + 1 UL PROTEIN SOLUTION: 12 MG/ML ENDOVII, 175 MM NACL, 20 MM MGCL2, 2 MM ZNCL2, 10 MM 2-MERCAPTO-ETHANOL, 10 % GLYCEROL, 10 MM MOPS PH6 WELL: 16-18% PEG5KMME, 200 MM AMMONIUM SULPHATE, 10 MM 2-MERCAPTO-ETHANOL, 100 MM TRIS PH 4.5, ~1 MM SODIUM AZIDE, 20 MM MAGNESIUM ACETATE |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 12 (mg/ml) | |
2 | 1 | reservoir | PEG5000 MME | 15.5-16 (%(w/v)) | |
3 | 1 | reservoir | sodium acetate | 100 (mM) | |
4 | 1 | reservoir | ammonium sulfate | 160 (mM) | |
5 | 1 | reservoir | magnesium acetate | 20 (mM) | |
6 | 1 | reservoir | beta-mercaptoethanol | 10 (mM) |