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1DUD

DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDE HYDROLASE (D-UTPASE) COMPLEXED WITH THE SUBSTRATE ANALOGUE DEOXYURIDINE 5'-DIPHOSPHATE (D-UDP)

Experimental procedure
Source typeROTATING ANODE
Source detailsRIGAKU RUH2R
Detector technologyAREA DETECTOR
DetectorSIEMENS
Spacegroup nameH 3
Unit cell lengths86.640, 86.640, 62.230
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution10.000 - 2.300
R-factor0.2
Rwork0.200
RMSD bond length0.017
RMSD bond angle27.900

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Data reduction softwareXDS
Phasing softwareX-PLOR (3.1)
Refinement softwareX-PLOR (3.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]4.480

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High resolution limit [Å]2.2502.250

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Rmerge0.0720.304

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Total number of observations33369

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Number of reflections7520
Completeness [%]67.035

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Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Batch method

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4.5

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20

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Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
111enzyme3.4 (mg/ml)
211succinate7 (mM)
311PEG80001.5 (%)

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PDB entries from 2024-05-15

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