1DOJ
Crystal structure of human alpha-thrombin*RWJ-51438 complex at 1.7 A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 1998-03-04 |
Detector | RIGAKU |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 62.982, 117.521, 47.989 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 8.000 - 1.700 |
R-factor | 0.196 * |
Rwork | 0.174 |
R-free | 0.23200 * |
RMSD bond length | 0.010 |
RMSD bond angle | 1.400 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | X-PLOR (3.851) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 99.000 | |
High resolution limit [Å] | 1.660 | 1.660 |
Rmerge | 0.040 | 0.200 |
Total number of observations | 289770 * | |
Number of reflections | 42979 * | |
<I/σ(I)> | 16.3 | |
Completeness [%] | 87.1 | 43 * |
Redundancy | 5 | 3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.3 * | 295 | 0.75 sodium acetate, 0.01% (w/v), 20% polyethylene glycol 4000 (w/v), pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 295.0K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | phosphate | 50 (mM) | |
2 | 1 | drop | protein | 6 (mg/ml) | |
3 | 1 | reservoir | sodium cacodylate | 0.1 (M) | |
4 | 1 | reservoir | sodium acetate | 0.75 (M) | |
5 | 1 | reservoir | sodium azide | 0.01 (%(w/v)) | |
6 | 1 | reservoir | PEG4000 | 20 (%(w/v)) |