1DEU
CRYSTAL STRUCTURE OF HUMAN PROCATHEPSIN X: A CYSTEINE PROTEASE WITH THE PROREGION COVALENTLY LINKED TO THE ACTIVE SITE CYSTEINE
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X8C |
Synchrotron site | NSLS |
Beamline | X8C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 1999-02-07 |
Detector | ADSC QUANTUM |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 84.820, 84.820, 169.720 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.000 - 1.700 |
Rwork | 0.204 |
R-free | 0.21500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Cathepsin B (PDB code 1HUC) Reference: Musil et al EMBO.J 1991 10 2321-2330 |
RMSD bond length | 0.034 |
RMSD bond angle | 24.200 * |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.000 | 1.780 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.048 | 0.208 |
Total number of observations | 521645 * | |
Number of reflections | 82047 | |
<I/σ(I)> | 19.5 | |
Completeness [%] | 95.4 | 90.7 |
Redundancy | 3.5 | 1.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.5 | 18 * | 300 mM (NH4)2SO4, 12% PEG4000, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 10.7 (mg/ml) | |
2 | 1 | reservoir | ammonium sulfate | 300 (mM) | |
3 | 1 | reservoir | PEG4000 | 12 (%) |