13MW
PanDDA analysis group deposition -- Crystal structure of PLpro-C111S in complex with PDK0219
This is a non-PDB format compatible entry.
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SSRF BEAMLINE BL02U1 |
| Synchrotron site | SSRF |
| Beamline | BL02U1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2024-05-06 |
| Detector | DECTRIS EIGER2 S 9M |
| Wavelength(s) | 0.97918 |
| Spacegroup name | P 32 2 1 |
| Unit cell lengths | 81.420, 81.420, 135.170 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 34.870 - 2.100 |
| R-factor | 0.171 |
| Rwork | 0.170 |
| R-free | 0.19440 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 7cjm |
| RMSD bond length | 0.006 |
| RMSD bond angle | 0.730 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.7) |
| Phasing software | DIMPLE |
| Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 34.870 | 34.870 | 2.150 |
| High resolution limit [Å] | 2.100 | 9.390 | 2.100 |
| Rmerge | 0.125 | 0.033 | 1.585 |
| Rmeas | 0.129 | 0.034 | 1.626 |
| Rpim | 0.029 | 0.008 | 0.359 |
| Total number of observations | 612806 | 5702 | 45562 |
| Number of reflections | 30951 | 405 | 2249 |
| <I/σ(I)> | 20.4 | 58.3 | 2.3 |
| Completeness [%] | 100.0 | 97.8 | 100 |
| Redundancy | 19.8 | 14.1 | 20.3 |
| CC(1/2) | 0.999 | 0.999 | 0.850 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6 | 291 | 1.4 M Sodium Maleate pH 6.0 |
