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Legacy flatfile-incompatible PDB entries
9CPI
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BU of 9cpi by Molmil
Structures of small molecules bound to RNA repeat expansions that cause Huntington's disease-like 2 and myotonic dystrophy type 1
Descriptor: 4-[1-(2-aminoethyl)-4,5-dihydro-1H-imidazol-2-yl]-N-[4-(4,5-dihydro-1H-imidazol-2-yl)phenyl]benzamide, RNA (5'-R(*GP*AP*CP*AP*GP*CP*UP*GP*CP*UP*GP*UP*C)-3')
Authors:Chen, J.L, Taghavi, A, Disney, M.D, Fountain, M.A, Childs-Disney, J.L.
Deposit date:2024-07-18
Release date:2024-08-07
Last modified:2024-08-14
Method:SOLUTION NMR
Cite:NMR structures of small molecules bound to a model of a CUG RNA repeat expansion.
Bioorg.Med.Chem.Lett., 111, 2024
9CSG
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BU of 9csg by Molmil
Human Serum Albumin Bound to Cerastecin Compound 5e
Descriptor: 2-(4-butylbenzene-1-sulfonamido)-5-(4-{3-carboxy-4-[4-(2-methoxyethyl)benzene-1-sulfonamido]anilino}-4-oxobutanamido)benzoic acid, Albumin, MYRISTIC ACID
Authors:Hruza, A, Klein, D.J, Ishchenko, A.
Deposit date:2024-07-23
Release date:2024-09-04
Last modified:2024-10-02
Method:X-RAY DIFFRACTION (1.914 Å)
Cite:Cerastecin Inhibition of the Lipooligosaccharide Transporter MsbA to Combat Acinetobacter baumannii : From Screening Impurity to In Vivo Efficacy.
J.Med.Chem., 67, 2024
9CSI
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BU of 9csi by Molmil
A. baumannii MsbA Bound to Cerastecin Compound 5
Descriptor: 3,3'-[(1,4-dioxobutane-1,4-diyl)bis(azanediyl)]bis[(4-butylbenzene-1-sulfonamido)benzoic acid], Lipid A export ATP-binding/permease protein MsbA, MAGNESIUM ION, ...
Authors:Klein, D.J, Ishchenko, A, Soisson, S, Cheng, R, Hennig, M.
Deposit date:2024-07-23
Release date:2024-09-04
Last modified:2024-10-02
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Cerastecin Inhibition of the Lipooligosaccharide Transporter MsbA to Combat Acinetobacter baumannii : From Screening Impurity to In Vivo Efficacy.
J.Med.Chem., 67, 2024
9CSY
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BU of 9csy by Molmil
SARS-CoV-2 papain-like protease (PLpro) bound to PF-07957472
Descriptor: 2-methyl-5-(4-methylpiperazin-1-yl)-N-{1-[(2P)-2-(1-methyl-1H-pyrazol-4-yl)quinolin-4-yl]cyclopropyl}benzamide, Papain-like protease, ZINC ION, ...
Authors:Mashalidis, E.H, Chang, J.S, Wu, H, Garnsey, M.
Deposit date:2024-07-24
Release date:2024-10-02
Method:X-RAY DIFFRACTION (2.595 Å)
Cite:Discovery of SARS-CoV-2 papain-like protease (PL pro ) inhibitors with efficacy in a murine infection model.
Sci Adv, 10, 2024
9CTH
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BU of 9cth by Molmil
Preliminary map of the Prothrombin-prothrombinase complex on nano discs
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Activated Factor V (FVa) heavy chain, Activated Factor V (FVa) light chain, ...
Authors:Stojanovski, B.M, Mohammed, B.M, Di Cera, E.
Deposit date:2024-07-25
Release date:2024-08-07
Last modified:2024-08-14
Method:ELECTRON MICROSCOPY (6.47 Å)
Cite:The Prothrombin-Prothrombinase Interaction.
Subcell Biochem, 104, 2024
9CUO
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BU of 9cuo by Molmil
Crystal structure of CRBN with compound 3
Descriptor: (3S)-3-(3-methyl-2-oxo-2,3-dihydro-1H-1,3-benzimidazol-1-yl)piperidine-2,6-dione, 1,2-ETHANEDIOL, Protein cereblon, ...
Authors:Zheng, X, Ji, N, Campbell, V, Slavin, A, Zhu, X, Chen, D, Rong, H, Enerson, B, Mayo, M, Sharma, K, Browne, C.M, Klaus, C.R, Li, H, Massa, G, McDonald, A.A, Shi, Y, Sintchak, M, Skouras, S, Walther, D.M, Yuan, K, Zhang, Y, Kelleher, J, Guang, L, Luo, X, Mainolfi, N, Weiss, M.M.
Deposit date:2024-07-26
Release date:2024-08-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Discovery of KT-474─a Potent, Selective, and Orally Bioavailable IRAK4 Degrader for the Treatment of Autoimmune Diseases.
J.Med.Chem., 2024
9CUW
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BU of 9cuw by Molmil
Crystal Structure of SETDB1 Tudor domain in complex with UNC100013
Descriptor: (2E)-4-(dimethylamino)-N-(4-{[6-(dimethylamino)hexyl]amino}-2-{[5-(dimethylamino)pentyl]amino}quinazolin-6-yl)but-2-enamide, 1,2-ETHANEDIOL, Histone-lysine N-methyltransferase SETDB1, ...
Authors:Silva, M, Dong, A, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2024-07-26
Release date:2024-10-02
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Crystal Structure of SETDB1 Tudor domain in complex with UNC100013
To be published
9CUX
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BU of 9cux by Molmil
Crystal Structure of SETDB1 Tudor domain in complex with UNC100016
Descriptor: (2E)-N-(4-{[6-(dimethylamino)hexyl]amino}-2-{[5-(dimethylamino)pentyl]amino}quinazolin-6-yl)but-2-enamide, 1,2-ETHANEDIOL, Histone-lysine N-methyltransferase SETDB1, ...
Authors:Silva, M, Dong, A, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2024-07-26
Release date:2024-10-02
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Crystal Structure of SETDB1 Tudor domain in complex with UNC100016
To be published
9CUZ
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BU of 9cuz by Molmil
Bufavirus 1 complexed with 6SLN
Descriptor: N-acetyl-alpha-neuraminic acid, VP1
Authors:Gulkis, M.C, McKenna, R, Bennett, A.D.
Deposit date:2024-07-27
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (2.16 Å)
Cite:Structural Characterization of Human Bufavirus 1: Receptor Binding and Endosomal pH-Induced Changes.
Viruses, 16, 2024
9CV0
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BU of 9cv0 by Molmil
Bufavirus 1 at pH 7.4
Descriptor: VP1
Authors:Gulkis, M.C, McKenna, R, Bennett, A.D.
Deposit date:2024-07-27
Release date:2024-08-28
Last modified:2024-09-18
Method:ELECTRON MICROSCOPY (2.84 Å)
Cite:Structural Characterization of Human Bufavirus 1: Receptor Binding and Endosomal pH-Induced Changes.
Viruses, 16, 2024
9CV9
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BU of 9cv9 by Molmil
Bufavirus 1 at pH 4.0
Descriptor: VP1
Authors:Gulkis, M.C, McKenna, R, Bennett, A.D.
Deposit date:2024-07-28
Release date:2024-08-28
Last modified:2024-09-18
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural Characterization of Human Bufavirus 1: Receptor Binding and Endosomal pH-Induced Changes.
Viruses, 16, 2024
9CWS
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BU of 9cws by Molmil
Bufavirus 1 at pH 2.6
Descriptor: VP1
Authors:Gulkis, M.C, McKenna, R, Bennett, A.D.
Deposit date:2024-07-30
Release date:2024-08-21
Last modified:2024-09-18
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:Structural Characterization of Human Bufavirus 1: Receptor Binding and Endosomal pH-Induced Changes.
Viruses, 16, 2024
9D3E
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BU of 9d3e by Molmil
Cryo-EM structure of CCR6 bound by SQA1 and OXM2
Descriptor: 4-[[3,4-bis(oxidanylidene)-2-[[(1~{R})-1-(4-propan-2-ylfuran-2-yl)propyl]amino]cyclobuten-1-yl]amino]-~{N},~{N}-dimethyl-3-oxidanyl-pyridine-2-carboxamide, CHOLESTEROL, Human CCR6, ...
Authors:Wasilko, D.J, Wu, H.
Deposit date:2024-08-09
Release date:2024-09-11
Method:ELECTRON MICROSCOPY (3.02 Å)
Cite:Structural basis for CCR6 modulation by allosteric antagonists.
Nat Commun, 15, 2024
9D3G
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BU of 9d3g by Molmil
Cryo-EM structure of CCR6 bound by SQA1 and OXM1
Descriptor: 1-(4-chlorophenyl)-N-{[(2R)-4-(2,3-dihydro-1H-inden-2-yl)-5-oxomorpholin-2-yl]methyl}cyclopropane-1-carboxamide, 4-[[3,4-bis(oxidanylidene)-2-[[(1~{R})-1-(4-propan-2-ylfuran-2-yl)propyl]amino]cyclobuten-1-yl]amino]-~{N},~{N}-dimethyl-3-oxidanyl-pyridine-2-carboxamide, CCR6, ...
Authors:Wasilko, D.J, Wu, H.
Deposit date:2024-08-10
Release date:2024-09-11
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:Structural basis for CCR6 modulation by allosteric antagonists.
Nat Commun, 15, 2024
9D5D
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BU of 9d5d by Molmil
Crystal Structure of Blood Coagulation Factor VIII C2 Domain Mutant L2251A/L2252A
Descriptor: Factor VIIIa light chain
Authors:Avery, N.G, Childers, K.C, Spiegel, P.C.
Deposit date:2024-08-13
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Biophysical characterization of blood coagulation factor VIII binding to lipid nanodiscs that mimic activated platelet surfaces
To Be Published
9D77
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BU of 9d77 by Molmil
Crystal form of Netrin-1 mimics nanotubes
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Meier, M, Krahn, N.J, McDougall, M.D, Rafiei, F, Koch, M, Stetefeld, J.
Deposit date:2024-08-16
Release date:2024-10-09
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Mechanistic insights in the higher-order protein assemblies of netrin-1
To Be Published
9D93
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BU of 9d93 by Molmil
Mycobacteriophage Bxb1 tail tip - Composite map and model
Descriptor: Major tail protein, Minor tail protein, Tapemeasure protein
Authors:Freeman, K.G.
Deposit date:2024-08-20
Release date:2024-09-25
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:Structure and infection dynamics of mycobacteriophage Bxb1
To Be Published
9D94
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BU of 9d94 by Molmil
Mycobacteriophage Bxb1 portal and connector assembly - Composite map and model
Descriptor: Head-to-tail adaptor, Head-to-tail stopper, Major tail protein, ...
Authors:Freeman, K.G.
Deposit date:2024-08-20
Release date:2024-09-25
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure and infection dynamics of mycobacteriophage Bxb1
To Be Published
9D9K
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BU of 9d9k by Molmil
Crystal structure of MurC from Pseudomonas aeruginosa in complex with inhibitor M17
Descriptor: 2-{[(4-amino-5,6-dimethylthieno[2,3-d]pyrimidin-2-yl)methyl]sulfanyl}pyridine-3-carboxylic acid, CHLORIDE ION, SULFATE ION, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2024-08-21
Release date:2024-09-04
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Crystal structure of MurC from Pseudomonas aeruginosa in complex with inhibitor M17
To be published
9D9W
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BU of 9d9w by Molmil
Mycobacteriophage Bxb1 C1 Capsid and Portal - Composite map and model
Descriptor: Major capsid protein, Portal protein
Authors:Freeman, K.G.
Deposit date:2024-08-21
Release date:2024-10-09
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure and infection dynamics of mycobacteriophage Bxb1
To Be Published
9D9X
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BU of 9d9x by Molmil
Mycobacteriophage Bxb1 Capsid - Composite map and model
Descriptor: Major capsid protein
Authors:Freeman, K.G.
Deposit date:2024-08-21
Release date:2024-09-25
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure and infection dynamics of mycobacteriophage Bxb1
To Be Published
9DHG
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BU of 9dhg by Molmil
DHODH in complex with Compound 5
Descriptor: (3P,7P)-7-[4-ethyl-3-(hydroxymethyl)-5-oxo-4,5-dihydro-1H-1,2,4-triazol-1-yl]-6-fluoro-3-(2-methylphenyl)-1-(propan-2-yl)quinolin-4(1H)-one, 1,2-ETHANEDIOL, ACETATE ION, ...
Authors:Shaffer, P.L.
Deposit date:2024-09-03
Release date:2024-10-09
Method:X-RAY DIFFRACTION (1.386 Å)
Cite:Identification of isoquinolinone DHODH inhibitor isosteres.
Bioorg.Med.Chem.Lett., 2024
9DHH
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BU of 9dhh by Molmil
DHODH in complex with Compound 8
Descriptor: (3S,7P)-7-[4-ethyl-3-(hydroxymethyl)-5-oxo-4,5-dihydro-1H-1,2,4-triazol-1-yl]-6-fluoro-3-(2-methylphenyl)-1-(propan-2-yl)-2,3-dihydroquinolin-4(1H)-one, 1,2-ETHANEDIOL, ACETATE ION, ...
Authors:Shaffer, P.L.
Deposit date:2024-09-03
Release date:2024-10-09
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Identification of isoquinolinone DHODH inhibitor isosteres.
Bioorg.Med.Chem.Lett., 2024
9DHI
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BU of 9dhi by Molmil
DHODH in complex with Compound 7
Descriptor: (2M,6P)-6-[4-ethyl-3-(hydroxymethyl)-5-oxo-4,5-dihydro-1H-1,2,4-triazol-1-yl]-7-fluoro-2-(2-methylphenyl)-4-(propan-2-yl)phthalazin-1(2H)-one, 1,2-ETHANEDIOL, ACETATE ION, ...
Authors:Shaffer, P.L.
Deposit date:2024-09-03
Release date:2024-10-09
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Identification of isoquinolinone DHODH inhibitor isosteres.
Bioorg.Med.Chem.Lett., 2024
9DHJ
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BU of 9dhj by Molmil
DHODH in complex with Compound 15
Descriptor: (2M,6P)-6-[4-ethyl-3-(hydroxymethyl)-5-oxo-4,5-dihydro-1H-1,2,4-triazol-1-yl]-7-fluoro-2-(2-methylphenyl)-4-[(2R)-1,1,1-trifluoropropan-2-yl]phthalazin-1(2H)-one, 1,2-ETHANEDIOL, ACETATE ION, ...
Authors:Shaffer, P.L.
Deposit date:2024-09-03
Release date:2024-10-09
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Identification of isoquinolinone DHODH inhibitor isosteres.
Bioorg.Med.Chem.Lett., 2024

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PDB entries from 2024-10-09

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