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Legacy flatfile-incompatible PDB entries
8T22
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Cryo-EM structure of mink variant Y453F trimeric spike protein bound to one mink ACE2 receptors at downRBD conformation
Descriptor: Angiotensin-converting enzyme, Spike glycoprotein
Authors:Ahn, H.M, Calderon, B, Fan, X, Gao, Y, Horgan, N, Zhou, B, Liang, B.
Deposit date:2023-06-05
Release date:2023-10-25
Method:ELECTRON MICROSCOPY (3.83 Å)
Cite:Structural basis of the American mink ACE2 binding by Y453F trimeric spike glycoproteins of SARS-CoV-2.
J Med Virol, 95, 2023
8T2E
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BU of 8t2e by Molmil
BG505 Boost2 SOSIP.664 in complex with NHP polyclonal antibody FP3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, FP3 Heavy Chain, ...
Authors:Pratap, P.P, Antansijevic, A, Ozorowski, G, Ward, A.B.
Deposit date:2023-06-05
Release date:2024-06-12
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Priming antibody responses to the fusion peptide in rhesus macaques.
Npj Vaccines, 9, 2024
8T2F
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BU of 8t2f by Molmil
BG505 Boost2 SOSIP.664 in complex with NHP polyclonal antibody N289
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, N289 Heavy Chain, ...
Authors:Pratap, P.P, Antansijevic, A, Ozorowski, G, Ward, A.B.
Deposit date:2023-06-05
Release date:2024-06-12
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Priming antibody responses to the fusion peptide in rhesus macaques.
Npj Vaccines, 9, 2024
8T49
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BU of 8t49 by Molmil
MD65 N332-GT5 SOSIP in complex with RM_N332_03 Fab and RM20A3 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, MD65 N332-GT5 SOSIP gp120, ...
Authors:Ozorowski, G, Torres, J.L, Ward, A.B.
Deposit date:2023-06-08
Release date:2024-05-08
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Vaccine priming of rare HIV broadly neutralizing antibody precursors in nonhuman primates.
Science, 384, 2024
8T4B
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BU of 8t4b by Molmil
MD65 N332-GT5 SOSIP in complex with RM_N332_32 Fab and RM20A3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, MD65 N332-GT5 SOSIP gp120, MD65 N332-GT5 SOSIP gp41, ...
Authors:Ozorowski, G, Torres, J.L, Ward, A.B.
Deposit date:2023-06-08
Release date:2024-05-08
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Vaccine priming of rare HIV broadly neutralizing antibody precursors in nonhuman primates.
Science, 384, 2024
8T4D
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MD65 N332-GT5 SOSIP in complex with RM_N332_08 Fab and RM20A3 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, MD65 N332-GT5 SOSIP gp120, ...
Authors:Ozorowski, G, Torres, J.L, Ward, A.B.
Deposit date:2023-06-09
Release date:2024-05-08
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Vaccine priming of rare HIV broadly neutralizing antibody precursors in nonhuman primates.
Science, 384, 2024
8T4K
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MD64 N332-GT5 SOSIP
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, MD64 N332-GT5 SOSIP gp120, ...
Authors:Ozorowski, G, Torres, J.L, Ward, A.B.
Deposit date:2023-06-09
Release date:2024-05-08
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Vaccine priming of rare HIV broadly neutralizing antibody precursors in nonhuman primates.
Science, 384, 2024
8T4L
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BU of 8t4l by Molmil
MD65 N332-GT5 SOSIP in complex with RM_N332_07 Fab and RM20A3 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, MD65 N332-GT5 SOSIP gp120, ...
Authors:Ozorowski, G, Torres, J.L, Ward, A.B.
Deposit date:2023-06-09
Release date:2024-05-08
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Vaccine priming of rare HIV broadly neutralizing antibody precursors in nonhuman primates.
Science, 384, 2024
8T60
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BU of 8t60 by Molmil
CryoEM structure of an inward-facing MelBSt at a Na(+)-bound and sugar low-affinity conformation
Descriptor: Melibiose permease, NabFab_H Chain, NabFab_L Chain, ...
Authors:Guan, L.
Deposit date:2023-06-14
Release date:2024-02-28
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.29 Å)
Cite:Mobile barrier mechanisms for Na + -coupled symport in an MFS sugar transporter.
Elife, 12, 2024
8T6P
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BU of 8t6p by Molmil
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 2 bp R-loop
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, NTS, TS, ...
Authors:Hibshman, G.N, Bravo, J.P.K, Taylor, D.W.
Deposit date:2023-06-16
Release date:2024-05-01
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9.
Nat Commun, 15, 2024
8T7S
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BU of 8t7s by Molmil
SpRYmer bound to NAC PAM DNA
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, MAGNESIUM ION, NTS, ...
Authors:Hibshman, G.N, Bravo, J.P.K, Taylor, D.W.
Deposit date:2023-06-21
Release date:2024-05-01
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.01 Å)
Cite:Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9.
Nat Commun, 15, 2024
8T84
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BU of 8t84 by Molmil
Racemic mixture of amyloid beta segment 35-MVGGVV-40 forms heterochiral rippled beta-sheet, includes hexafluoroisopropanol
Descriptor: 1,1,1,3,3,3-hexafluoropropan-2-ol, Racemic mixture of amyloid beta segment 35-MVGGVV-40
Authors:Sawaya, M.R, Raskatov, J.A, Hazari, A.
Deposit date:2023-06-21
Release date:2023-11-29
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.101 Å)
Cite:Racemic Peptides from Amyloid beta and Amylin Form Rippled beta-Sheets Rather Than Pleated beta-Sheets.
J.Am.Chem.Soc., 145, 2023
8T8B
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BU of 8t8b by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MAI-tripeptidyl-tRNA analog ACCA-IAMf at 2.65A resolution
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 16S Ribosomal RNA, 23S Ribosomal RNA, ...
Authors:Thaler, J, Syroegin, E.A, Breuker, K, Polikanov, Y.S, Micura, R.
Deposit date:2023-06-22
Release date:2023-07-19
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Practical Synthesis of N -Formylmethionylated Peptidyl-tRNA Mimics.
Acs Chem.Biol., 18, 2023
8T8C
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BU of 8t8c by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 16S Ribosomal RNA, 23S Ribosomal RNA, ...
Authors:Thaler, J, Syroegin, E.A, Breuker, K, Polikanov, Y.S, Micura, R.
Deposit date:2023-06-22
Release date:2023-07-19
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Practical Synthesis of N -Formylmethionylated Peptidyl-tRNA Mimics.
Acs Chem.Biol., 18, 2023
8T8D
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BU of 8t8d by Molmil
Structure of Helicobacter pylori adhesin A, HpaA
Descriptor: ACETATE ION, GLYCEROL, Neuraminyllactose-binding hemagglutinin
Authors:Martini, C, Calmettes, C.
Deposit date:2023-06-22
Release date:2024-01-31
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Unraveling the crystal structure of the HpaA adhesin: insights into cell adhesion function and epitope localization of a Helicobacter pylori vaccine candidate.
Mbio, 15, 2024
8T8O
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BU of 8t8o by Molmil
CCW Flagellar Switch Complex - FliF, FliG, FliM, and FliN forming 34-mer C-ring from Salmonella
Descriptor: Flagellar M-ring protein, Flagellar motor switch protein FliG, Flagellar motor switch protein FliN, ...
Authors:Singh, P.K, Iverson, T.M.
Deposit date:2023-06-22
Release date:2024-02-28
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural basis for directional rotation of the Salmonella flagellum
To Be Published
8T8P
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BU of 8t8p by Molmil
33-mer FliF MS-ring from Salmonella
Descriptor: Flagellar M-ring protein
Authors:Singh, P.K, Iverson, T.M.
Deposit date:2023-06-23
Release date:2024-02-28
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis for directional rotation of the Salmonella flagellum
To Be Published
8TCC
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BU of 8tcc by Molmil
GTP Cyclohydrolase-IB with dehydrocostus lactone
Descriptor: 1,2-ETHANEDIOL, GTP cyclohydrolase FolE2, MANGANESE (II) ION, ...
Authors:McWhorter, K.L, Amaya Lopez, C.Y, Davis, K.M.
Deposit date:2023-06-30
Release date:2024-07-03
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Combatting melioidosis with chemical synthetic lethality
To be published
8TEP
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BU of 8tep by Molmil
Human cytomegalovirus portal vertex, virion configuration 1 (VC1)
Descriptor: Capsid vertex component 1, Capsid vertex component 2, Inner tegument protein, ...
Authors:Jih, J, Liu, Y.T, Liu, W, Zhou, H.
Deposit date:2023-07-06
Release date:2024-03-06
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:The incredible bulk: Human cytomegalovirus tegument architectures uncovered by AI-empowered cryo-EM.
Sci Adv, 10, 2024
8TEW
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BU of 8tew by Molmil
Human cytomegalovirus penton vertex, CVSC-bound configuration
Descriptor: Capsid vertex component 1, Capsid vertex component 2, Large structural phosphoprotein, ...
Authors:Jih, J, Liu, Y.T, Liu, W, Zhou, H.
Deposit date:2023-07-07
Release date:2024-03-06
Method:ELECTRON MICROSCOPY (3.02 Å)
Cite:The incredible bulk: Human cytomegalovirus tegument architectures uncovered by AI-empowered cryo-EM.
Sci Adv, 10, 2024
8TEX
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BU of 8tex by Molmil
Avian Adeno-associated virus - empty capsid
Descriptor: Capsid protein
Authors:Hsi, J, Mietzsch, M, Chipman, P, Afione, S, Zeher, A, Huang, R, Chiorini, J, McKenna, R.
Deposit date:2023-07-07
Release date:2023-08-30
Last modified:2023-11-08
Method:ELECTRON MICROSCOPY (2.54 Å)
Cite:Structural and antigenic characterization of the avian adeno-associated virus capsid.
J.Virol., 97, 2023
8TEY
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BU of 8tey by Molmil
Avian Adeno-associated virus - empty capsid
Descriptor: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, Capsid protein
Authors:Hsi, J, Mietzsch, M, Chipman, P, Afione, S, Zeher, A, Huang, R, Chiorini, J, McKenna, R.
Deposit date:2023-07-07
Release date:2023-08-30
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:Structural and antigenic characterization of the avian adeno-associated virus capsid.
J.Virol., 97, 2023
8TFB
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BU of 8tfb by Molmil
Cryo-EM structure of the Methanosarcina mazei apo glutamin synthetase structure: dodecameric form
Descriptor: Glutamine synthetase, MAGNESIUM ION
Authors:Schumacher, M.A.
Deposit date:2023-07-09
Release date:2023-11-15
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:M. mazei glutamine synthetase and glutamine synthetase-GlnK1 structures reveal enzyme regulation by oligomer modulation.
Nat Commun, 14, 2023
8TFC
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Cryo-EM structure of Methanosarcina mazie glutamine synthetase captured as partial oligomer
Descriptor: Glutamine synthetase
Authors:Schumacher, M.A.
Deposit date:2023-07-09
Release date:2023-11-15
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (6.9 Å)
Cite:M. mazei glutamine synthetase and glutamine synthetase-GlnK1 structures reveal enzyme regulation by oligomer modulation.
Nat Commun, 14, 2023
8TFK
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BU of 8tfk by Molmil
Cryo-EM structure of the Methanosarcina mazei glutamine synthetase (GS) with Met-Sox-P and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Glutamine synthetase, L-METHIONINE-S-SULFOXIMINE PHOSPHATE, ...
Authors:Schumacher, M.A.
Deposit date:2023-07-11
Release date:2023-11-15
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (2.66 Å)
Cite:M. mazei glutamine synthetase and glutamine synthetase-GlnK1 structures reveal enzyme regulation by oligomer modulation.
Nat Commun, 14, 2023

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PDB entries from 2024-08-07

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