Legacy flatfile-incompatible PDB entries

8FCG	Cryo-EM structure of Chikungunya virus asymmetric unit Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Capsid protein, E1 glycoprotein, ... Authors: Su, G.C, Chmielewsk, D, Kaelber, J, Pintilie, G, Chen, M, Jin, J, Auguste, A, Chiu, W. Deposit date: 2022-12-01 Release date: 2024-03-20 Last modified: 2024-04-03 Method: ELECTRON MICROSCOPY (3.09 Å) Cite: Cryogenic electron microscopy and tomography reveal imperfect icosahedral symmetry in alphaviruses. Pnas Nexus, 3, 2024
8FEO	16mer self-complementary duplex RNA with two separated native U:U pairs Descriptor: MAGNESIUM ION, RNA 16mer, STRONTIUM ION Authors: Fang, Z, Szostak, J.W. Deposit date: 2022-12-06 Release date: 2024-01-24 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.52 Å) Cite: Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying. J.Am.Chem.Soc., 146, 2024
8FEP	16mer self-complementary duplex RNA with two continuous native U:U pairs Descriptor: RNA 16mer Authors: Fang, Z, Szostak, J.W. Deposit date: 2022-12-06 Release date: 2024-01-24 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying. J.Am.Chem.Soc., 146, 2024
8FEQ	16mer self-complementary duplex RNA with two separated s(2)U:s(2)U pairs Descriptor: CALCIUM ION, RNA 16mer with two separated s(2)U Authors: Fang, Z, Zhou, L, Szostak, J.W. Deposit date: 2022-12-06 Release date: 2024-01-24 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying. J.Am.Chem.Soc., 146, 2024
8FER	16mer self-complementary duplex RNA with two continuous s(2)U:s(2)U pairs Descriptor: RNA 16mer with two continuous s(2)U Authors: Fang, Z, Zhou, L, Szostak, J.W. Deposit date: 2022-12-06 Release date: 2024-01-24 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.54 Å) Cite: Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying. J.Am.Chem.Soc., 146, 2024
8FEX	Inactivate state of Maribacter polysiphoniae Argonuate (short pAgo system) Descriptor: TIR-APAZ, short pAgo Authors: Shen, Z.F, Yang, X.Y, Fu, T.M. Deposit date: 2022-12-06 Release date: 2023-08-23 Last modified: 2023-09-20 Method: ELECTRON MICROSCOPY (3.07 Å) Cite: Oligomerization-mediated activation of a short prokaryotic Argonaute. Nature, 621, 2023
8FIZ	Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex) Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Florez Ariza, A, Wee, L, Tong, A, Canari, C, Grob, P, Nogales, E, Bustamante, C. Deposit date: 2022-12-18 Release date: 2023-03-29 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: A trailing ribosome speeds up RNA polymerase at the expense of transcript fidelity via force and allostery. Cell, 186, 2023
8FJK	Golden Shiner Reovirus Core Polar Vertex Descriptor: Clamp protein VP6, Major inner capsid protein VP3, Microtubule-associated protein VP5, ... Authors: Stevens, A.S, Zhou, Z.H. Deposit date: 2022-12-19 Release date: 2023-03-22 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Asymmetric reconstruction of the aquareovirus core at near-atomic resolution and mechanism of transcription initiation. Protein Cell, 14, 2023
8FJL	Golden Shiner Reovirus Core Tropical Vertex Descriptor: Clamp protein VP6, Major inner capsid protein VP3, Microtubule-associated protein VP5, ... Authors: Stevens, A.S, Zhou, Z.H. Deposit date: 2022-12-19 Release date: 2023-03-08 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.27 Å) Cite: Asymmetric reconstruction of the aquareovirus core at near-atomic resolution and mechanism of transcription initiation. Protein Cell, 14, 2023
8FK5	Cryo-EM Structure of PG9RSH DU011 Fab in complex with BG505 DS-SOSIP.664 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ... Authors: Gorman, J, Kwong, P.D. Deposit date: 2022-12-20 Release date: 2023-05-31 Last modified: 2023-07-26 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Improved HIV-1 neutralization breadth and potency of V2-apex antibodies by in silico design. Cell Rep, 42, 2023
8FKJ	Yeast ATP Synthase in conformation-3, at pH 6 Descriptor: ATP synthase protein 8, ATP synthase subunit 4, mitochondrial, ... Authors: Sharma, S, Patel, H, Luo, M, Mueller, D.M, Liao, M. Deposit date: 2022-12-21 Release date: 2024-01-24 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Conformational ensemble of yeast ATP synthase at low pH reveals unique intermediates and plasticity in F 1 -F o coupling. Nat.Struct.Mol.Biol., 31, 2024
8FKP	Human nucleolar pre-60S ribosomal subunit (State A1) Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L13, ... Authors: Vanden Broeck, A, Klinge, S. Deposit date: 2022-12-21 Release date: 2023-07-12 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (2.85 Å) Cite: Principles of human pre-60 S biogenesis. Science, 381, 2023
8FKQ	Human nucleolar pre-60S ribosomal subunit (State A2) Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L13, ... Authors: Vanden Broeck, A, Klinge, S. Deposit date: 2022-12-21 Release date: 2023-07-12 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (2.76 Å) Cite: Principles of human pre-60 S biogenesis. Science, 381, 2023
8FKR	Human nucleolar pre-60S ribosomal subunit (State B1) Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L12, ... Authors: Vanden Broeck, A, Klinge, S. Deposit date: 2022-12-21 Release date: 2023-07-12 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (2.89 Å) Cite: Principles of human pre-60 S biogenesis. Science, 381, 2023
8FKS	Human nucleolar pre-60S ribosomal subunit (State B2) Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L12, ... Authors: Vanden Broeck, A, Klinge, S. Deposit date: 2022-12-21 Release date: 2023-07-12 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (2.88 Å) Cite: Principles of human pre-60 S biogenesis. Science, 381, 2023
8FKT	Human nucleolar pre-60S ribosomal subunit (State C1) Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L10a, ... Authors: Vanden Broeck, A, Klinge, S. Deposit date: 2022-12-21 Release date: 2023-07-12 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (2.81 Å) Cite: Principles of human pre-60 S biogenesis. Science, 381, 2023
8FKU	Human nucleolar pre-60S ribosomal subunit (State C2) Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L10a, ... Authors: Vanden Broeck, A, Klinge, S. Deposit date: 2022-12-21 Release date: 2023-07-12 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (2.82 Å) Cite: Principles of human pre-60 S biogenesis. Science, 381, 2023
8FKV	Human nucleolar pre-60S ribosomal subunit (State D1) Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L10a, ... Authors: Vanden Broeck, A, Klinge, S. Deposit date: 2022-12-21 Release date: 2023-07-12 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (2.47 Å) Cite: Principles of human pre-60 S biogenesis. Science, 381, 2023
8FKW	Human nucleolar pre-60S ribosomal subunit (State D2) Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L10a, ... Authors: Vanden Broeck, A, Klinge, S. Deposit date: 2022-12-21 Release date: 2023-07-12 Last modified: 2023-08-16 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Principles of human pre-60 S biogenesis. Science, 381, 2023
8FKX	Human nucleolar pre-60S ribosomal subunit (State E) Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L10a, ... Authors: Vanden Broeck, A, Klinge, S. Deposit date: 2022-12-21 Release date: 2023-07-12 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (2.59 Å) Cite: Principles of human pre-60 S biogenesis. Science, 381, 2023
8FKY	Human nucleolar pre-60S ribosomal subunit (State F) Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L10a, ... Authors: Vanden Broeck, A, Klinge, S. Deposit date: 2022-12-21 Release date: 2023-07-12 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (2.67 Å) Cite: Principles of human pre-60 S biogenesis. Science, 381, 2023
8FKZ	Human nucleolar pre-60S ribosomal subunit (State G) Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L12, ... Authors: Vanden Broeck, A, Klinge, S. Deposit date: 2022-12-21 Release date: 2023-07-12 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.04 Å) Cite: Principles of human pre-60 S biogenesis. Science, 381, 2023
8FL0	Human nucleolar pre-60S ribosomal subunit (State H) Descriptor: 28S rRNA, 5S rRNA, 60S ribosomal protein L11, ... Authors: Vanden Broeck, A, Klinge, S. Deposit date: 2022-12-21 Release date: 2023-07-12 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.91 Å) Cite: Principles of human pre-60 S biogenesis. Science, 381, 2023
8FL1	Cryo-EM Structure of PG9RSH DU025 Fab in complex with BG505 DS-SOSIP.664 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ... Authors: Gorman, J, Kwong, P.D. Deposit date: 2022-12-21 Release date: 2023-05-31 Last modified: 2023-07-26 Method: ELECTRON MICROSCOPY (3.75 Å) Cite: Improved HIV-1 neutralization breadth and potency of V2-apex antibodies by in silico design. Cell Rep, 42, 2023
8FL2	Human nuclear pre-60S ribosomal subunit (State I1) Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Vanden Broeck, A, Klinge, S. Deposit date: 2022-12-21 Release date: 2023-07-12 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (2.67 Å) Cite: Principles of human pre-60 S biogenesis. Science, 381, 2023

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