Legacy flatfile-incompatible PDB entries

9FBV	70S Escherichia coli ribosome with P-site initiatior tRNA. Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S16, ... Authors: Koller, T.O, Wilson, D.N. Deposit date: 2024-05-14 Release date: 2024-06-26 Method: ELECTRON MICROSCOPY (2.4 Å) Cite: Paenilamicins from the honey bee pathogen Paenibacillus larvae are context-specific translocation inhibitors of protein synthesis. Biorxiv, 2024
9FBX	C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH 5-(1-benzyl-4-chloro-1H-imidazol-2-yl)-1,3-dimethylpyridin-2(1H)-one Descriptor: 1,2-ETHANEDIOL, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, 5-(1-benzyl-4-chloro-1H-imidazol-2-yl)-1,3-dimethylpyridin-2(1H)-one, ... Authors: Chung, C. Deposit date: 2024-05-14 Release date: 2024-06-26 Last modified: 2024-07-10 Method: X-RAY DIFFRACTION (1.602 Å) Cite: Structure- and Property-Based Optimization of Efficient Pan-Bromodomain and Extra Terminal Inhibitors to Identify Oral and Intravenous Candidate I-BET787. J.Med.Chem., 67, 2024
9FBY	N-TERMINAL BROMODOMAIN OF HUMAN BRD4 with (5-(4-chloro-1-((tetrahydro-2H-pyran-4-yl)methyl)-1H-imidazol-2-yl)-1,3-dimethylpyridin-2(1H)-one Descriptor: 1,2-ETHANEDIOL, 5-[4-chloranyl-1-(oxan-4-ylmethyl)imidazol-2-yl]-1,3-dimethyl-pyridin-2-one, Bromodomain-containing protein 4 Authors: Chung, C. Deposit date: 2024-05-14 Release date: 2024-06-26 Last modified: 2024-07-10 Method: X-RAY DIFFRACTION (1.853 Å) Cite: Structure- and Property-Based Optimization of Efficient Pan-Bromodomain and Extra Terminal Inhibitors to Identify Oral and Intravenous Candidate I-BET787. J.Med.Chem., 67, 2024
9FCH	P116 dimer in the full state (PDB structure of the full-length ectodomain truncated to amino acids 246-818) Descriptor: Uncharacterized protein MG075 homolog Authors: Mager, S. Deposit date: 2024-05-15 Release date: 2024-05-29 Method: ELECTRON MICROSCOPY (6.52 Å) Cite: P116 from Mycoplasma is a self-sufficient lipid uptake and delivery machinery To Be Published
9FDI	Gcase in complex with small molecule inhibitor 1 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(phenylmethyl)piperidine, ... Authors: Tisi, D, Cleasby, A. Deposit date: 2024-05-17 Release date: 2024-07-03 Method: X-RAY DIFFRACTION (1.41 Å) Cite: Fragment-Based Discovery of a Series of Allosteric-Binding Site Modulators of beta-Glucocerebrosidase. J.Med.Chem., 2024
9FMD	Integrative model of the human post-catalytic spliceosome (P-complex) Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent RNA helicase DHX8, ... Authors: Rothe, P, Plaschka, C, Vorlaender, M.K. Deposit date: 2024-06-05 Release date: 2024-07-10 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Mechanism for the initiation of spliceosome disassembly. Nature, 2024
9FPZ	Human NatA-MAP2 80S ribosome complex Descriptor: 28S rRNA (300-MER, fragments), 5.8S rRNA (58-MER), ... Authors: Klein, M.A, Wild, K, Sinning, I. Deposit date: 2024-06-14 Release date: 2024-07-03 Method: ELECTRON MICROSCOPY (2.69 Å) Cite: Multi-protein assemblies orchestrate enzymatic processing of the nascent chain on the 80S ribosome To Be Published
9FQ0	Human NatA-NAC-MAP1 80S ribosome complex Descriptor: 28S rRNA (fragments, 298-MER), 5.8S rRNA, ... Authors: Klein, M.A, Wild, K, Sinning, I. Deposit date: 2024-06-14 Release date: 2024-07-03 Method: ELECTRON MICROSCOPY (4.67 Å) Cite: Multi-protein assemblies orchestrate enzymatic processing of the nascent chain on the 80S ribosome To Be Published
9FT0	Yeast 20S proteasome in complex with epoxyketone inhibitor 42 Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3-PYRIDIN-4-YL-2,4-DIHYDRO-INDENO[1,2-.C.]PYRAZOLE, CHLORIDE ION, ... Authors: Maurits, E, Huber, E.M, Dekker, P.M, Wang, X, Heinemeyer, W, Florea, B.I, Groll, M, Overkleeft, H.S. Deposit date: 2024-06-23 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Structure-based design of peptide epoxyketones selectively targeting the three human immunoproteasome active sites to be published
9FT1	Yeast 20S proteasome in complex with epoxyketone inhibitor 13 Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3-PYRIDIN-4-YL-2,4-DIHYDRO-INDENO[1,2-.C.]PYRAZOLE, MAGNESIUM ION, ... Authors: Maurits, E, Huber, E.M, Dekker, P.M, Wang, X, Heinemeyer, W, Florea, B.I, Groll, M, Overkleeft, H.S. Deposit date: 2024-06-23 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure-based design of peptide epoxyketones selectively targeting the three human immunoproteasome active sites to be published
9FWG	LSD1/CoREST bound to bomedemstat Descriptor: Bomedemstat FAD adduct, Lysine-specific histone demethylase 1A, REST corepressor 1 Authors: Speranzini, V, Mattevi, A. Deposit date: 2024-06-30 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Characterization of structural, biochemical, pharmacokinetic, and pharmacodynamic properties of the LSD1 inhibitor bomedemstat in preclinical models. Prostate, 84, 2024

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