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Legacy flatfile-incompatible PDB entries
7BGA
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BU of 7bga by Molmil
Mutant F105A of recombinant beta-lactoglobulin in complex with endogenous ligand
Descriptor: Beta-lactoglobulin, LAURIC ACID, SULFATE ION
Authors:Loch, J.I, Lazinska, I, Lewinski, K.
Deposit date:2021-01-06
Release date:2021-01-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Interactions of new lactoglobulin variants with tetracaine: crystallographic studies of ligand binding to lactoglobulin mutants possessing single substitution in the binding pocket.
Acta Biochim.Pol., 68, 2021
7BGL
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BU of 7bgl by Molmil
Salmonella LP ring 26 mer refined in C26 map
Descriptor: (2~{R},4~{R},5~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-4,5-bis(oxidanyl)oxane-2-carboxylic acid, Flagellar L-ring protein, Flagellar P-ring protein, ...
Authors:Johnson, S, Furlong, E, Lea, S.M.
Deposit date:2021-01-07
Release date:2021-05-05
Last modified:2021-07-14
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:Molecular structure of the intact bacterial flagellar basal body.
Nat Microbiol, 6, 2021
7BGO
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BU of 7bgo by Molmil
The crystal structure of gene product PA4063 from Pseudomonas aeruginosa in complex with Zn (space group P65)
Descriptor: DUF2796 domain-containing protein, ZINC ION
Authors:Fiorillo, A, Ilari, A.
Deposit date:2021-01-08
Release date:2021-11-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.301 Å)
Cite:Structure and metal-binding properties of PA4063, a novel player in periplasmic zinc trafficking by Pseudomonas aeruginosa.
Acta Crystallogr D Struct Biol, 77, 2021
7BGX
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BU of 7bgx by Molmil
Mutant F105L of recombinant beta-lactoglobulin
Descriptor: Beta-lactoglobulin, GLYCEROL, SULFATE ION
Authors:Loch, J.I, Wrobel, P, Lewinski, K.
Deposit date:2021-01-08
Release date:2021-01-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Interactions of new lactoglobulin variants with tetracaine: crystallographic studies of ligand binding to lactoglobulin mutants possessing single substitution in the binding pocket.
Acta Biochim.Pol., 68, 2021
7BGZ
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BU of 7bgz by Molmil
Mutant L39K of recombinant beta-lactoglobulin in complex with endogenous ligand
Descriptor: 1,2-ETHANEDIOL, Beta-lactoglobulin, DECANOIC ACID
Authors:Loch, J.I, Siuda, M.K, Lewinski, K.
Deposit date:2021-01-09
Release date:2021-01-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.401 Å)
Cite:Interactions of new lactoglobulin variants with tetracaine: crystallographic studies of ligand binding to lactoglobulin mutants possessing single substitution in the binding pocket.
Acta Biochim.Pol., 68, 2021
7BH0
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BU of 7bh0 by Molmil
Mutant L39Y of recombinant beta-lactoglobulin in complex with endogenous ligand
Descriptor: Beta-lactoglobulin, CHLORIDE ION, LAURIC ACID
Authors:Loch, J.I, Siuda, M.K, Lewinski, K.
Deposit date:2021-01-09
Release date:2021-01-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Interactions of new lactoglobulin variants with tetracaine: crystallographic studies of ligand binding to lactoglobulin mutants possessing single substitution in the binding pocket.
Acta Biochim.Pol., 68, 2021
7BHO
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BU of 7bho by Molmil
DNA origami signpost designed model
Descriptor: DNA, DNA scaffold
Authors:Silvester, E, Vollmer, B, Prazak, V, Vasishtan, D, Machala, E.A, Whittle, C, Black, S, Bath, J, Turberfield, A.J, Gruenewald, K, Baker, L.A.
Deposit date:2021-01-11
Release date:2021-04-14
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (36.44 Å)
Cite:DNA origami signposts for identifying proteins on cell membranes by electron cryotomography.
Cell, 184, 2021
7BHP
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BU of 7bhp by Molmil
Cryo-EM structure of the human Ebp1 - 80S ribosome
Descriptor: 28S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ...
Authors:Desogus, J, Bhaskar, V, Chao, J.A.
Deposit date:2021-01-11
Release date:2021-02-03
Last modified:2021-03-31
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Dynamic association of human Ebp1 with the ribosome.
Rna, 27, 2021
7BIJ
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BU of 7bij by Molmil
Crystal Structure of SARS-CoV-2 main protease (Nsp5) in complex with compound 13
Descriptor: (3~{S})-3'-(5-fluoranylpyridin-3-yl)spiro[1,2-dihydroindene-3,5'-imidazolidine]-2',4'-dione, 3C-like proteinase nsp5, DIMETHYL SULFOXIDE
Authors:Talibov, V.O.
Deposit date:2021-01-12
Release date:2022-02-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Ultralarge Virtual Screening Identifies SARS-CoV-2 Main Protease Inhibitors with Broad-Spectrum Activity against Coronaviruses.
J.Am.Chem.Soc., 144, 2022
7BK5
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PfCopC mutant - E27A
Descriptor: CHLORIDE ION, COPPER (II) ION, PHOSPHATE ION, ...
Authors:Muderspach, S.J, Ipsen, J, Rollan, C.H, Bertelsen, A.B, Norholm, M.H.H, Johansen, K.S, Lo Leggio, L.
Deposit date:2021-01-15
Release date:2021-07-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Copper binding and reactivity at the histidine brace motif: insights from mutational analysis of the Pseudomonas fluorescens copper chaperone CopC.
Febs Lett., 595, 2021
7BK6
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BU of 7bk6 by Molmil
PfCopC mutant - D83A
Descriptor: ACETATE ION, CHLORIDE ION, COPPER (II) ION, ...
Authors:Muderspach, S.J, Ipsen, J, Rollan, C.H, Bertelsen, A.B, Norholm, M.H.H, Johansen, K.S, Lo Leggio, L.
Deposit date:2021-01-15
Release date:2021-07-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Copper binding and reactivity at the histidine brace motif: insights from mutational analysis of the Pseudomonas fluorescens copper chaperone CopC.
Febs Lett., 595, 2021
7BK7
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BU of 7bk7 by Molmil
PfCopC mutant - D83N
Descriptor: ACETATE ION, CHLORIDE ION, COPPER (II) ION, ...
Authors:Muderspach, S.J, Ipsen, J, Rollan, C.H, Bertelsen, A.B, Norholm, M.H.H, Johansen, K.S, Lo Leggio, L.
Deposit date:2021-01-15
Release date:2021-07-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Copper binding and reactivity at the histidine brace motif: insights from mutational analysis of the Pseudomonas fluorescens copper chaperone CopC.
Febs Lett., 595, 2021
7BKX
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BU of 7bkx by Molmil
Diploptera punctata inspired lipocalin-like Milk protein expressed in Saccharomyces cerevisiae
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ...
Authors:Banerjee, S, Kanagavijayan, D, Subramanian, R, Santhakumari, P.R, Chavas, L.M.G, Ramaswamy, S.
Deposit date:2021-01-17
Release date:2021-12-22
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure of recombinantly expressed cockroach Lili-Mip protein in glycosylated and deglycosylated forms.
Biochim Biophys Acta Gen Subj, 1866, 2022
7BL1
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BU of 7bl1 by Molmil
human complex II-BATS bound to membrane-attached Rab5a-GTP
Descriptor: Beclin-1, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Tremel, S, Morado, D.R, Kovtun, O, Williams, R.L, Briggs, J.A.G, Munro, S, Ohashi, Y, Bertram, J, Perisic, O.
Deposit date:2021-01-17
Release date:2021-03-03
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (9.8 Å)
Cite:Structural basis for VPS34 kinase activation by Rab1 and Rab5 on membranes.
Nat Commun, 12, 2021
7BL2
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BU of 7bl2 by Molmil
pre-50S-ObgE particle state 1
Descriptor: 23S ribosomal RNA, 50S ribosomal protein L11, 50S ribosomal protein L13, ...
Authors:Hilal, T, Nikolay, R, Schmidt, S, Spahn, C.M.T.
Deposit date:2021-01-18
Release date:2021-05-12
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Snapshots of native pre-50S ribosomes reveal a biogenesis factor network and evolutionary specialization.
Mol.Cell, 81, 2021
7BL3
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BU of 7bl3 by Molmil
pre-50S-ObgE particle state 2
Descriptor: 23S ribosomal RNA, 50S ribosomal protein L11, 50S ribosomal protein L13, ...
Authors:Hilal, T, Nikolay, R, Spahn, C.M.T.
Deposit date:2021-01-18
Release date:2021-05-12
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Snapshots of native pre-50S ribosomes reveal a biogenesis factor network and evolutionary specialization.
Mol.Cell, 81, 2021
7BLH
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BU of 7blh by Molmil
Structure of CBM BT3015C from Bacteroides thetaiotaomicron in complex with O-GalNAc core 1-Thr
Descriptor: CALCIUM ION, THREONINE, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose, ...
Authors:Costa, R.L, Carvalho, A.L.
Deposit date:2021-01-18
Release date:2022-03-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Structural basis for mucin-type O-glycan recognition by proteins of a Bacteroides thetaiotaomicron polysaccharide utilization loci
To Be Published
7BN2
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BU of 7bn2 by Molmil
Clathrin heavy chain N-terminal domain bound to Non structured protein 3 from Eastern Equine Encephalitis Virus
Descriptor: Clathrin heavy chain 1, Non structured protein 3 from Eastern Equine Encephalitis Virus, PHOSPHATE ION, ...
Authors:Badgujar, D.C, Dobritzsch, D.
Deposit date:2021-01-21
Release date:2022-03-02
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.965 Å)
Cite:Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs
Nat Commun, 14, 2023
7BNM
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BU of 7bnm by Molmil
Closed conformation of D614G SARS-CoV-2 spike protein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Benton, D.J, Wrobel, A.G, Rosenthal, P.B, Gamblin, S.J.
Deposit date:2021-01-22
Release date:2021-02-03
Last modified:2021-03-10
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:The effect of the D614G substitution on the structure of the spike glycoprotein of SARS-CoV-2.
Proc.Natl.Acad.Sci.USA, 118, 2021
7BNS
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BU of 7bns by Molmil
VDR complex with BXL-62
Descriptor: 1,25-Dihydroxy-16-ene-20-cyclopropyl-vitamin D3, Nuclear receptor coactivator 1, Vitamin D3 receptor A
Authors:Rochel, N, Belorusova, A.Y.
Deposit date:2021-01-22
Release date:2022-03-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Vitamin D Analogs Bearing C-20 Modifications Stabilize the Agonistic Conformation of Non-Responsive Vitamin D Receptor Variants.
Int J Mol Sci, 23, 2022
7BNU
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BU of 7bnu by Molmil
VDR complex with BXL-62
Descriptor: 1,25-Dihydroxy-16-ene-20-cyclopropyl-vitamin D3, Nuclear receptor coactivator 1, Vitamin D3 receptor A
Authors:Rochel, N, Belorusova, A.Y.
Deposit date:2021-01-22
Release date:2022-03-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Vitamin D Analogs Bearing C-20 Modifications Stabilize the Agonistic Conformation of Non-Responsive Vitamin D Receptor Variants.
Int J Mol Sci, 23, 2022
7BO7
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BU of 7bo7 by Molmil
CRYSTAL STRUCTURE OF THE HUMAN PRMT5:MEP50 COMPLEX with JNJB44355437
Descriptor: (2~{R},3~{R},4~{S},5~{R})-2-[(4~{a}~{S},7~{a}~{S})-4-azanyl-1,4,4~{a},7~{a}-tetrahydropyrrolo[2,3-d]pyrimidin-7-yl]-5-(quinolin-7-yloxymethyl)oxolane-3,4-diol, 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Brown, D, Robinson, C, Carr, K.H, Pande, V.
Deposit date:2021-01-24
Release date:2022-03-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:CRYSTAL STRUCTURE OF THE HUMAN PRMT5:MEP50 COMPLEX with JNJB44355437
To Be Published
7BSI
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BU of 7bsi by Molmil
Epstein-Barr virus, one asymmetric unit structure of the icosahedral tegumented capsid
Descriptor: Major capsid protein, Small capsomere-interacting protein, Triplex capsid protein 1, ...
Authors:Li, Z, Yu, X.
Deposit date:2020-03-30
Release date:2020-09-30
Last modified:2020-10-14
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:CryoEM structure of the tegumented capsid of Epstein-Barr virus.
Cell Res., 30, 2020
7BT6
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BU of 7bt6 by Molmil
Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)
Descriptor: 60S ribosomal protein L11-A, 60S ribosomal protein L13-A, 60S ribosomal protein L14-A, ...
Authors:Li, Y, Wilson, D.M.
Deposit date:2020-03-31
Release date:2020-10-28
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:Structural insights into assembly of the ribosomal nascent polypeptide exit tunnel.
Nat Commun, 11, 2020
7BTB
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BU of 7btb by Molmil
Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)
Descriptor: 60S ribosomal protein L11-A, 60S ribosomal protein L13-A, 60S ribosomal protein L14-A, ...
Authors:Li, Y, Wilson, D.M.
Deposit date:2020-04-01
Release date:2020-10-28
Method:ELECTRON MICROSCOPY (3.22 Å)
Cite:Structural insights into assembly of the ribosomal nascent polypeptide exit tunnel.
Nat Commun, 11, 2020

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