PDB形式変換不可の PDB エントリー

5UYL	70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Loveland, A.B, Demo, G, Grigorieff, N, Korostelev, A.A. 登録日 2017-02-24 公開日 2017-06-14 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Ensemble cryo-EM elucidates the mechanism of translation fidelity. Nature, 546, 2017
5UYM	70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Loveland, A.B, Demo, G, Grigorieff, N, Korostelev, A.A. 登録日 2017-02-24 公開日 2017-06-07 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Ensemble cryo-EM elucidates the mechanism of translation fidelity Nature, 546, 2017
5UYN	70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Loveland, A.B, Demo, G, Grigorieff, N, Korostelev, A.A. 登録日 2017-02-24 公開日 2017-06-07 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Ensemble cryo-EM elucidates the mechanism of translation fidelity Nature, 546, 2017
5UYP	70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Loveland, A.B, Demo, G, Grigorieff, N, Korostelev, A.A. 登録日 2017-02-24 公開日 2017-06-07 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Ensemble cryo-EM elucidates the mechanism of translation fidelity Nature, 546, 2017
5UYQ	70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Loveland, A.B, Demo, G, Grigorieff, N, Korostelev, A.A. 登録日 2017-02-24 公開日 2017-06-07 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Ensemble cryo-EM elucidates the mechanism of translation fidelity Nature, 546, 2017
5V74	Structure of the intact Haliangium ochraceum microcompartment shell 分子名称: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml, Microcompartments protein 著者 Sutter, M, Kerfeld, C.A. 登録日 2017-03-17 公開日 2017-06-21 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (3.51015467477 Å) 主引用文献 Assembly principles and structure of a 6.5-MDa bacterial microcompartment shell. Science, 356, 2017
5V8I	Thermus thermophilus 70S ribosome lacking ribosomal protein uS17 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 16S Ribosomal RNA, 23S Ribosomal RNA, ... 著者 Gregory, S.T, Jogl, G. 登録日 2017-03-22 公開日 2018-03-28 最終更新日 2025-03-19 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 Structural robustness of the ribosome inferred from X-ray crystal structures of the 30S ribosomal subunit and the 70S ribosome lacking ribosomal protein uS17 To be published
5V93	Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Yang, K, Chang, J.-Y, Cui, Z, Li, X, Meng, R, Duan, L, Thongchol, J, Jakana, J, Huwe, C, Sacchettini, J, Zhang, J. 登録日 2017-03-22 公開日 2017-09-20 最終更新日 2025-08-06 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Structural insights into species-specific features of the ribosome from the human pathogen Mycobacterium tuberculosis. Nucleic Acids Res., 45, 2017
5VFP	Nucleotide-driven Triple-state Remodeling of the AAA-ATPase Channel in the Activated Human 26S Proteasome 分子名称: 26S proteasome non-ATPase regulatory subunit 1, 26S proteasome non-ATPase regulatory subunit 11, 26S proteasome non-ATPase regulatory subunit 12, ... 著者 Zhu, Y, Wang, W.L, Yu, D, Ouyang, Q, Lu, Y, Mao, Y. 登録日 2017-04-09 公開日 2018-07-18 最終更新日 2024-11-13 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Structural mechanism for nucleotide-driven remodeling of the AAA-ATPase unfoldase in the activated human 26S proteasome. Nat Commun, 9, 2018
5VFQ	Nucleotide-driven Triple-state Remodeling of the AAA-ATPase Channel in the Activated Human 26S Proteasome 分子名称: 26S proteasome non-ATPase regulatory subunit 1, 26S proteasome non-ATPase regulatory subunit 11, 26S proteasome non-ATPase regulatory subunit 12, ... 著者 Zhu, Y, Wang, W.L, Yu, D, Ouyang, Q, Lu, Y, Mao, Y. 登録日 2017-04-09 公開日 2018-07-18 最終更新日 2024-11-06 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Structural mechanism for nucleotide-driven remodeling of the AAA-ATPase unfoldase in the activated human 26S proteasome. Nat Commun, 9, 2018
5VFS	Nucleotide-Driven Triple-State Remodeling of the AAA-ATPase Channel in the Activated Human 26S Proteasome 分子名称: 26S proteasome non-ATPase regulatory subunit 1, 26S proteasome non-ATPase regulatory subunit 11, 26S proteasome non-ATPase regulatory subunit 12, ... 著者 Zhu, Y, Wang, W.L, Yu, D, Ouyang, Q, Lu, Y, Mao, Y. 登録日 2017-04-09 公開日 2018-07-18 最終更新日 2024-11-06 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structural mechanism for nucleotide-driven remodeling of the AAA-ATPase unfoldase in the activated human 26S proteasome. Nat Commun, 9, 2018
5VFU	Nucleotide-driven Triple-state Remodeling of the AAA-ATPase Channel in the Activated Human 26S Proteasome 分子名称: 26S protease regulatory subunit 10B, 26S protease regulatory subunit 4, 26S protease regulatory subunit 6A, ... 著者 Zhu, Y, Wang, W.L, Yu, D, Ouyang, Q, Lu, Y, Mao, Y. 登録日 2017-04-09 公開日 2018-07-18 最終更新日 2024-10-23 実験手法 ELECTRON MICROSCOPY (5.8 Å) 主引用文献 Structural mechanism for nucleotide-driven remodeling of the AAA-ATPase unfoldase in the activated human 26S proteasome. Nat Commun, 9, 2018
5VGZ	Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle 分子名称: 26S proteasome complex subunit SEM1, 26S proteasome non-ATPase regulatory subunit 1, 26S proteasome non-ATPase regulatory subunit 11, ... 著者 Lu, Y, Wu, J, Dong, Y, Chen, S, Sun, S, Ma, Y.B, Ouyang, Q, Finley, D, Kirschner, M.W, Mao, Y. 登録日 2017-04-12 公開日 2017-08-23 最終更新日 2023-08-16 実験手法 ELECTRON MICROSCOPY (4.5 Å) 主引用文献 Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle. Mol. Cell, 67, 2017
5VHF	Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle 分子名称: 26S proteasome complex subunit SEM1, 26S proteasome non-ATPase regulatory subunit 1, 26S proteasome non-ATPase regulatory subunit 10, ... 著者 Lu, Y, Wu, J, Dong, Y, Chen, S, Sun, S, Ma, Y.B, Ouyang, Q, Finley, D, Kirschner, M.W, Mao, Y. 登録日 2017-04-13 公開日 2017-08-23 最終更新日 2023-08-16 実験手法 ELECTRON MICROSCOPY (5.7 Å) 主引用文献 Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle. Mol. Cell, 67, 2017
5VHH	Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle 分子名称: 26S proteasome complex subunit SEM1, 26S proteasome non-ATPase regulatory subunit 1, 26S proteasome non-ATPase regulatory subunit 10, ... 著者 Lu, Y, Wu, J, Dong, Y, Chen, S, Sun, S, Ma, Y.B, Ouyang, Q, Finley, D, Kirschner, M.W, Mao, Y. 登録日 2017-04-13 公開日 2017-08-23 最終更新日 2023-08-16 実験手法 ELECTRON MICROSCOPY (6.1 Å) 主引用文献 Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle. Mol. Cell, 67, 2017
5VHI	Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle 分子名称: 26S proteasome complex subunit SEM1, 26S proteasome non-ATPase regulatory subunit 1, 26S proteasome non-ATPase regulatory subunit 10, ... 著者 Lu, Y, Wu, J, Dong, Y, Chen, S, Sun, S, Ma, Y.B, Ouyang, Q, Finley, D, Kirschner, M.W, Mao, Y. 登録日 2017-04-13 公開日 2017-08-23 最終更新日 2023-08-16 実験手法 ELECTRON MICROSCOPY (6.8 Å) 主引用文献 Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle. Mol. Cell, 67, 2017
5VHS	Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle 分子名称: 26S proteasome complex subunit SEM1, 26S proteasome non-ATPase regulatory subunit 1, 26S proteasome non-ATPase regulatory subunit 11, ... 著者 Lu, Y, Wu, J, Dong, Y, Chen, S, Sun, S, Ma, Y.B, Ouyang, Q, Finley, D, Kirschner, M.W, Mao, Y. 登録日 2017-04-13 公開日 2017-08-23 最終更新日 2023-08-16 実験手法 ELECTRON MICROSCOPY (8.8 Å) 主引用文献 Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle. Mol. Cell, 67, 2017
5VKU	An atomic structure of the human cytomegalovirus (HCMV) capsid with its securing layer of pp150 tegument protein 分子名称: Major capsid protein, Small capsomere-interacting protein, Tegument protein pp150, ... 著者 Yu, X, Jih, J, Jiang, J, Zhou, H. 登録日 2017-04-24 公開日 2017-06-28 最終更新日 2024-10-30 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Atomic structure of the human cytomegalovirus capsid with its securing tegument layer of pp150. Science, 356, 2017
5VLZ	Backbone model for phage Qbeta capsid 分子名称: Capsid protein, Maturation protein A2 著者 Cui, Z, Zhang, J. 登録日 2017-04-26 公開日 2017-10-18 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 Structures of Q beta virions, virus-like particles, and the Q beta-MurA complex reveal internal coat proteins and the mechanism of host lysis. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5VP2	Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution 分子名称: 16S ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Osterman, I.A, Khabibullina, N.F, Komarova, E.S, Kasatsky, P, Kartsev, V.G, Bogdanov, A.A, Dontsova, O.A, Konevega, A.L, Sergiev, P.V, Polikanov, Y.S. 登録日 2017-05-04 公開日 2017-06-28 最終更新日 2025-03-12 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Madumycin II inhibits peptide bond formation by forcing the peptidyl transferase center into an inactive state. Nucleic Acids Res., 45, 2017
5VPO	The 70S P-site ASL SufA6 complex 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hong, S, Sunita, S, Dunkle, J.A, Maehigashi, T, Dunham, C.M. 登録日 2017-05-05 公開日 2018-09-26 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (3.34 Å) 主引用文献 Mechanism of tRNA-mediated +1 ribosomal frameshifting. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5VPP	The 70S P-site tRNA SufA6 complex 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hong, S, Sunita, S, Dunkle, J.A, Maehigashi, T, Dunham, C.M. 登録日 2017-05-05 公開日 2018-09-26 最終更新日 2024-12-25 実験手法 X-RAY DIFFRACTION (3.9 Å) 主引用文献 Mechanism of tRNA-mediated +1 ribosomal frameshifting. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5VYC	Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. 分子名称: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ... 著者 Lomakin, I.B, Stolboushkina, E.A, Vaidya, A.T, Garber, M.B, Dmitriev, S.E, Steitz, T.A. 登録日 2017-05-24 公開日 2017-07-19 最終更新日 2024-12-25 実験手法 X-RAY DIFFRACTION (6 Å) 主引用文献 Crystal Structure of the Human Ribosome in Complex with DENR-MCT-1. Cell Rep, 20, 2017
5W1O	Crystal Structure of HPV16 L1 Pentamer Bound to Heparin Oligosaccharides 分子名称: 2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-alpha-D-glucopyranose, 2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-alpha-D-glucopyranose, Major capsid protein L1 著者 Dasgupta, J, Chen, X.S. 登録日 2017-06-04 公開日 2017-10-18 最終更新日 2024-12-25 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural basis of oligosaccharide receptor recognition by human papillomavirus. J. Biol. Chem., 286, 2011
5W4K	Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Metelev, M, Osterman, I.A, Ghilarov, D, Khabibullina, N.F, Yakimov, A, Shabalin, K, Utkina, I, Travin, D.Y, Komarova, E.S, Serebryakova, M, Artamonova, T, Khodorkovskii, M, Konevega, A.L, Sergiev, P.V, Severinov, K, Polikanov, Y.S. 登録日 2017-06-12 公開日 2017-08-30 最終更新日 2025-04-02 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Klebsazolicin inhibits 70S ribosome by obstructing the peptide exit tunnel. Nat. Chem. Biol., 13, 2017

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