Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB形式変換不可の PDB エントリー
8OZF
DownloadVisualize
BU of 8ozf by Molmil
cryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-2
分子名称: DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), Piwi domain-containing protein, RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'), ...
著者Babatunde, E, Dong, C.N, Xu, H.L, Henning, S.
登録日2023-05-09
公開日2023-08-16
最終更新日2023-08-23
実験手法ELECTRON MICROSCOPY (3.73 Å)
主引用文献Activation mechanism of a short argonaute-TIR prokaryotic immune system.
Sci Adv, 9, 2023
8OZG
DownloadVisualize
BU of 8ozg by Molmil
cryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-1
分子名称: DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), MAGNESIUM ION, Piwi domain-containing protein, ...
著者Babatunde, E, Dong, C.N, Xu, H.L, Henning, S.
登録日2023-05-09
公開日2023-08-16
最終更新日2023-08-23
実験手法ELECTRON MICROSCOPY (3.37 Å)
主引用文献Activation mechanism of a short argonaute-TIR prokaryotic immune system.
Sci Adv, 9, 2023
8OZI
DownloadVisualize
BU of 8ozi by Molmil
cryoEM structure of SPARTA complex pre-NAD cleavage
分子名称: DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Piwi domain-containing protein, ...
著者Babatunde, E, Dong, C.N, Xu, H.L, Henning, S.
登録日2023-05-09
公開日2023-08-16
最終更新日2023-08-23
実験手法ELECTRON MICROSCOPY (3.22 Å)
主引用文献Activation mechanism of a short argonaute-TIR prokaryotic immune system.
Sci Adv, 9, 2023
8P0J
DownloadVisualize
BU of 8p0j by Molmil
Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex
分子名称: DNA-directed RNA polymerase 133 kDa polypeptide, DNA-directed RNA polymerase 147 kDa polypeptide, DNA-directed RNA polymerase 18 kDa subunit, ...
著者Grimm, C, Jungwirth, S, Fischer, U.
登録日2023-05-10
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (2.39 Å)
主引用文献Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex (CASP target)
To Be Published
8P0K
DownloadVisualize
BU of 8p0k by Molmil
Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex, module 2 of capping enzyme mobile
分子名称: DNA-directed RNA polymerase 133 kDa polypeptide, DNA-directed RNA polymerase 147 kDa polypeptide, DNA-directed RNA polymerase 18 kDa subunit, ...
著者Grimm, C, Jungwirth, S, Fischer, U.
登録日2023-05-10
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (2.64 Å)
主引用文献Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex (CASP target)
To Be Published
8P0N
DownloadVisualize
BU of 8p0n by Molmil
Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex shallow conformation
分子名称: DNA-directed RNA polymerase 133 kDa polypeptide, DNA-directed RNA polymerase 147 kDa polypeptide, DNA-directed RNA polymerase 18 kDa subunit, ...
著者Grimm, C, Jungwirth, S, Fischer, U.
登録日2023-05-10
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (2.58 Å)
主引用文献Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex (CASP target)
To Be Published
8P0X
DownloadVisualize
BU of 8p0x by Molmil
Structure of the human Commander complex Retriever Subcomplex
分子名称: Coiled-coil domain-containing protein 22, Coiled-coil domain-containing protein 93, VPS35 endosomal protein-sorting factor-like, ...
著者Kumpula, E.P, Laulumaa, S, Huiskonen, J.T.
登録日2023-05-11
公開日2024-03-20
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (7.5 Å)
主引用文献Structure and interactions of the endogenous human Commander complex.
Nat.Struct.Mol.Biol., 31, 2024
8P16
DownloadVisualize
BU of 8p16 by Molmil
E167K RF2 on E. coli 70S release complex with UGG (Structure I)
分子名称: 1,4-DIAMINOBUTANE, 16S rRNA, 23S rRNA, ...
著者Pundir, S, Larsson, D.S.D, Selmer, M, Sanyal, S.
登録日2023-05-11
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (2.77 Å)
主引用文献The compensatory mechanism of a naturally evolved E167K RF2 counteracting the loss of RF1 in bacteria
To Be Published
8P17
DownloadVisualize
BU of 8p17 by Molmil
E167K RF2 on E. coli 70S release complex with UGG (Structure II)
分子名称: 1,4-DIAMINOBUTANE, 16S RNA, 23S rRNA, ...
著者Pundir, S, Larsson, D.S.D, Selmer, M, Sanyal, S.
登録日2023-05-11
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (2.78 Å)
主引用文献The compensatory mechanism of a naturally evolved E167K RF2 counteracting the loss of RF1 in bacteria
To Be Published
8P18
DownloadVisualize
BU of 8p18 by Molmil
E167K RF2 on E. coli 70S release complex with UGG (Structure III)
分子名称: 1,4-DIAMINOBUTANE, 16S rRNA, 23S rRNA, ...
著者Pundir, S, Larsson, D.S.D, Selmer, M, Sanyal, S.
登録日2023-05-11
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (2.77 Å)
主引用文献The compensatory mechanism of a naturally evolved E167K RF2 counteracting the loss of RF1 in bacteria
To Be Published
8P1T
DownloadVisualize
BU of 8p1t by Molmil
Crystal structure of human methionine adenosyltransferase 2A (MAT2A) in complex with SAM and allosteric inhibitor Z237451470
分子名称: 1,2-ETHANEDIOL, 6-cyclopropyl-~{N}-(1~{H}-indazol-5-yl)-1-propan-2-yl-pyrazolo[3,4-b]pyridine-4-carboxamide, CHLORIDE ION, ...
著者Thomsen, M, Thieulin-Pardo, G, Neumann, L.
登録日2023-05-12
公開日2023-08-30
実験手法X-RAY DIFFRACTION (1.442 Å)
主引用文献Discovery of novel methionine adenosyltransferase 2A (MAT2A) allosteric inhibitors by structure-based virtual screening.
Bioorg.Med.Chem.Lett., 94, 2023
8P1V
DownloadVisualize
BU of 8p1v by Molmil
Crystal structure of human methionine adenosyltransferase 2A (MAT2A) in complex with SAM and allosteric compound 2
分子名称: 1,2-ETHANEDIOL, 6-cyclopropyl-~{N}-(2-methylindazol-5-yl)-1-propan-2-yl-pyrazolo[3,4-b]pyridine-4-carboxamide, CHLORIDE ION, ...
著者Thomsen, M, Thieulin-Pardo, G, Neumann, L.
登録日2023-05-12
公開日2023-08-30
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Discovery of novel methionine adenosyltransferase 2A (MAT2A) allosteric inhibitors by structure-based virtual screening.
Bioorg.Med.Chem.Lett., 94, 2023
8P1W
DownloadVisualize
BU of 8p1w by Molmil
Crystal structure of human methionine adenosyltransferase 2A (MAT2A) in complex with allosteric compound STL232591
分子名称: 1,2-ETHANEDIOL, 5'-DEOXY-5'-METHYLTHIOADENOSINE, 8-methoxy-1-(4-methoxyphenyl)-3-methyl-2-oxidanyl-[1]benzofuro[3,2-c]pyridine, ...
著者Thomsen, M, Thieulin-Pardo, G, Neumann, L.
登録日2023-05-12
公開日2023-08-30
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Discovery of novel methionine adenosyltransferase 2A (MAT2A) allosteric inhibitors by structure-based virtual screening.
Bioorg.Med.Chem.Lett., 94, 2023
8P1X
DownloadVisualize
BU of 8p1x by Molmil
TarM(Se)_G117R-UDP-glucose
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, PHOSPHATE ION, ...
著者Guo, Y, Stehle, T.
登録日2023-05-13
公開日2023-12-06
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Invasive Staphylococcus epidermidis uses a unique processive wall teichoic acid glycosyltransferase to evade immune recognition.
Sci Adv, 9, 2023
8P1Y
DownloadVisualize
BU of 8p1y by Molmil
Arabidopsis thaliana mutated variant C244S of seryl-tRNA synthetase
分子名称: Serine--tRNA ligase, cytoplasmic
著者Kekez, I, Soic, R, Rokov-Plavec, J, Matkovic-Calogovic, D.
登録日2023-05-13
公開日2024-05-22
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Arabidopsis thaliana mutated variant C244S of seryl-tRNA synthetase
To Be Published
8P1Z
DownloadVisualize
BU of 8p1z by Molmil
Arabidopsis thaliana cytosolic seryl-tRNA synthetase in addition of dithiothreitol (DTT)
分子名称: Serine--tRNA ligase, cytoplasmic
著者Kekez, I, Soic, R, Rokov-Plavec, J, Matkovic-Calogovic, D.
登録日2023-05-13
公開日2024-05-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Arabidopsis thaliana cytosolic seryl-tRNA synthetase in addition of dithiothreitol (DTT)
To Be Published
8P20
DownloadVisualize
BU of 8p20 by Molmil
TarM(Se)_G117R-UDP-4RboP-glucose
分子名称: BETA-MERCAPTOETHANOL, CHLORIDE ION, GLYCEROL, ...
著者Guo, Y, Stehle, T.
登録日2023-05-14
公開日2023-12-06
実験手法X-RAY DIFFRACTION (2.848 Å)
主引用文献Invasive Staphylococcus epidermidis uses a unique processive wall teichoic acid glycosyltransferase to evade immune recognition.
Sci Adv, 9, 2023
8P2F
DownloadVisualize
BU of 8p2f by Molmil
Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state
分子名称: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 2-[(3~{R},4~{S},5~{S},8~{S},9~{S},10~{S},11~{R},13~{S},14~{S},16~{S})-16-acetyloxy-4,8,10,14-tetramethyl-3,11-bis(oxidanyl)-1,2,3,4,5,6,7,9,11,12,13,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]-5-cyclopentyl-pentanoic acid, ...
著者Gonzalez-Lopez, A, Selmer, M.
登録日2023-05-16
公開日2024-05-01
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (2.44 Å)
主引用文献Structures of the Staphylococcus aureus ribosome inhibited by fusidic acid and fusidic acid cyclopentane.
Sci Rep, 14, 2024
8P2G
DownloadVisualize
BU of 8p2g by Molmil
Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state
分子名称: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 2-[(3~{R},4~{S},5~{S},8~{S},9~{S},10~{S},11~{R},13~{S},14~{S},16~{S})-16-acetyloxy-4,8,10,14-tetramethyl-3,11-bis(oxidanyl)-1,2,3,4,5,6,7,9,11,12,13,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]-5-cyclopentyl-pentanoic acid, ...
著者Gonzalez-Lopez, A, Selmer, M.
登録日2023-05-16
公開日2024-05-01
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (2.02 Å)
主引用文献Structures of the Staphylococcus aureus ribosome inhibited by fusidic acid and fusidic acid cyclopentane.
Sci Rep, 14, 2024
8P2H
DownloadVisualize
BU of 8p2h by Molmil
Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state
分子名称: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ...
著者Gonzalez-Lopez, A, Selmer, M.
登録日2023-05-16
公開日2024-05-01
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (2.49 Å)
主引用文献Structures of the Staphylococcus aureus ribosome inhibited by fusidic acid and fusidic acid cyclopentane.
Sci Rep, 14, 2024
8P2K
DownloadVisualize
BU of 8p2k by Molmil
Ternary complex of translating ribosome, NAC and METAP1
分子名称: 18s rRNA, 28S rRNA, 40S ribosomal protein S11, ...
著者Jia, M, Jaskolowski, M, Scaiola, A, Jomaa, A, Ban, N.
登録日2023-05-16
公開日2023-07-19
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献NAC controls cotranslational N-terminal methionine excision in eukaryotes.
Science, 380, 2023
8P4G
DownloadVisualize
BU of 8p4g by Molmil
Crystal structure of a multicopper oxidase 3F3 variant from Pyrobaculum aerophilum
分子名称: CHLORIDE ION, COPPER (II) ION, Multicopper oxidase
著者Borges, P.T, Brissos, V, Frazao, C, Martins, L.O.
登録日2023-05-21
公開日2024-02-21
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (2.59 Å)
主引用文献Flexible active-site loops fine-tune substrate specificity of hyperthermophilic metallo-oxidases.
J.Biol.Inorg.Chem., 29, 2024
8P4T
DownloadVisualize
BU of 8p4t by Molmil
The spike complex of the Lujo Virus
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Glycoprotein, ...
著者Eilon-Ashkenazy, M, Diskin, R.
登録日2023-05-23
公開日2024-06-12
実験手法ELECTRON MICROSCOPY (2.96 Å)
主引用文献The spike complex of the Lujo Virus
To Be Published
8P5D
DownloadVisualize
BU of 8p5d by Molmil
Spraguea lophii ribosome in the closed conformation by cryo sub tomogram averaging
分子名称: 40S Ribosomal protein S19, 40S ribosomal protein S0, 40S ribosomal protein S10, ...
著者Gil Diez, P, McLaren, M, Isupov, M.N, Daum, B, Conners, R, Williams, B.
登録日2023-05-23
公開日2023-06-21
最終更新日2023-12-20
実験手法ELECTRON MICROSCOPY (10.8 Å)
主引用文献CryoEM reveals that ribosomes in microsporidian spores are locked in a dimeric hibernating state.
Nat Microbiol, 8, 2023
8P5E
DownloadVisualize
BU of 8p5e by Molmil
S. cerevisiae nexus-sCMGE after DNA replication initiation
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 45, ...
著者Henrikus, S.S, Willhoft, O.
登録日2023-05-24
公開日2024-05-29
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Unwinding of a eukaryotic origin of replication visualized by cryo-EM.
Nat.Struct.Mol.Biol., 2024

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon