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Legacy flatfile-incompatible PDB entries
8PHQ
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BU of 8phq by Molmil
Top cap of the Borrelia bacteriophage BB1 procapsid, fivefold-symmetrized outer shell
Descriptor: Decorator protein P03, Decorator protein P05, Major capsid protein, ...
Authors:Rumnieks, J, Fuzik, T, Tars, K.
Deposit date:2023-06-20
Release date:2023-07-19
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.69 Å)
Cite:Structure of the Borrelia Bacteriophage phi BB1 Procapsid.
J.Mol.Biol., 435, 2023
8PHR
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BU of 8phr by Molmil
Middle part of the Borrelia bacteriophage BB1 procapsid, tenfold-symmetrized outer shell
Descriptor: Decorator protein P03, Decorator protein P05, Major capsid protein, ...
Authors:Rumnieks, J, Fuzik, T, Tars, K.
Deposit date:2023-06-20
Release date:2023-07-19
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.65 Å)
Cite:Structure of the Borrelia Bacteriophage phi BB1 Procapsid.
J.Mol.Biol., 435, 2023
8PHS
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BU of 8phs by Molmil
Bottom cap of the Borrelia bacteriophage BB1 procapsid, fivefold-symmetrized outer shell
Descriptor: Decorator protein P03, Decorator protein P04, Decorator protein P05, ...
Authors:Rumnieks, J, Fuzik, T, Tars, K.
Deposit date:2023-06-20
Release date:2023-07-19
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.82 Å)
Cite:Structure of the Borrelia Bacteriophage phi BB1 Procapsid.
J.Mol.Biol., 435, 2023
8PHU
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BU of 8phu by Molmil
Asymmetric structure of the portal-containing cap of the Borrelia bacteriophage BB1 procapsid
Descriptor: Decorator protein P03, Decorator protein P04, Decorator protein P05, ...
Authors:Rumnieks, J, Fuzik, T, Tars, K.
Deposit date:2023-06-20
Release date:2023-07-19
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (7.41 Å)
Cite:Structure of the Borrelia Bacteriophage phi BB1 Procapsid.
J.Mol.Biol., 435, 2023
8PI3
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BU of 8pi3 by Molmil
Cathepsin S Y132D mutant in complex with NNPI-C10 inhibitor
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CADMIUM ION, ...
Authors:Petruzzella, A, Lau, K, Pojer, F, Oricchio, E.
Deposit date:2023-06-21
Release date:2024-06-05
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Antibody-peptide conjugates deliver covalent inhibitors blocking oncogenic cathepsins.
Nat.Chem.Biol., 20, 2024
8PIU
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BU of 8piu by Molmil
60-meric complex of dihydrolipoamide acetyltransferase (E2) of the human pyruvate dehydrogenase complex
Descriptor: Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial
Authors:Zdanowicz, R, Afanasyev, P, Boehringer, D, Glockshuber, R.
Deposit date:2023-06-22
Release date:2024-07-10
Last modified:2024-07-31
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Stoichiometry and architecture of the human pyruvate dehydrogenase complex.
Sci Adv, 10, 2024
8PJ1
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BU of 8pj1 by Molmil
Structure of human 48S translation initiation complex in open codon scanning state (48S-1)
Descriptor: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ...
Authors:Petrychenko, V, Yi, S.-H, Liedtke, D, Peng, B.Z, Rodnina, M.V, Fischer, N.
Deposit date:2023-06-22
Release date:2024-08-14
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis for translational control by the human 48S initiation complex from codon scanning toward subunit joining
Nat.Struct.Mol.Biol., 2024
8PJ2
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BU of 8pj2 by Molmil
Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)
Descriptor: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ...
Authors:Petrychenko, V, Yi, S.-H, Liedtke, D, Peng, B.Z, Rodnina, M.V, Fischer, N.
Deposit date:2023-06-22
Release date:2024-08-14
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis for translational control by the human 48S initiation complex from codon scanning toward subunit joining
Nat.Struct.Mol.Biol., 2024
8PJ3
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BU of 8pj3 by Molmil
Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)
Descriptor: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ...
Authors:Petrychenko, V, Yi, S.-H, Liedtke, D, Peng, B.Z, Rodnina, M.V, Fischer, N.
Deposit date:2023-06-22
Release date:2024-08-14
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural basis for translational control by the human 48S initiation complex from codon scanning toward subunit joining
Nat.Struct.Mol.Biol., 2024
8PJ4
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BU of 8pj4 by Molmil
Structure of human 48S translation initiation complex after eIF5 release (48S-4)
Descriptor: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ...
Authors:Petrychenko, V, Yi, S.-H, Liedtke, D, Peng, B.Z, Rodnina, M.V, Fischer, N.
Deposit date:2023-06-22
Release date:2024-08-14
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural basis for translational control by the human 48S initiation complex from codon scanning toward subunit joining
Nat.Struct.Mol.Biol., 2024
8PJ5
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BU of 8pj5 by Molmil
Structure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)
Descriptor: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ...
Authors:Petrychenko, V, Yi, S.-H, Liedtke, D, Peng, B.Z, Rodnina, M.V, Fischer, N.
Deposit date:2023-06-22
Release date:2024-08-14
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis for translational control by the human 48S initiation complex from codon scanning toward subunit joining
Nat.Struct.Mol.Biol., 2024
8PJ6
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BU of 8pj6 by Molmil
Structure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-pathway)
Descriptor: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ...
Authors:Petrychenko, V, Yi, S.-H, Liedtke, D, Peng, B.Z, Rodnina, M.V, Fischer, N.
Deposit date:2023-06-22
Release date:2024-08-14
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis for translational control by the human 48S initiation complex from codon scanning toward subunit joining
Nat.Struct.Mol.Biol., 2024
8PJJ
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BU of 8pjj by Molmil
Cryo-EM structure of MLE in complex with SL7UUC RNA and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Dosage compensation regulator, SL7UUC RNA
Authors:Jagtap, P.K.A, Hennig, J.
Deposit date:2023-06-23
Release date:2023-11-22
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (4.24 Å)
Cite:Structural basis of RNA-induced autoregulation of the DExH-type RNA helicase maleless.
Mol.Cell, 83, 2023
8PJM
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BU of 8pjm by Molmil
Metallo beta-lactamase VIM2 with compound AK110
Descriptor: Beta-lactamase VIM-2, CHLORIDE ION, SODIUM ION, ...
Authors:Lucic, A, Hinchliffe, P, Schofield, C.
Deposit date:2023-06-23
Release date:2023-08-16
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Metallo beta-lactamase VIM2 with compound AK110
To Be Published
8PK0
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BU of 8pk0 by Molmil
human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7
Descriptor: 16S rRNA + pre-H68-71 segment, 39S ribosomal protein L10, mitochondrial, ...
Authors:Kummer, E, Nguyen, T.G, Ritter, C.
Deposit date:2023-06-23
Release date:2023-12-13
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:Structural insights into the role of GTPBP10 in the RNA maturation of the mitoribosome.
Nat Commun, 14, 2023
8PKH
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BU of 8pkh by Molmil
Borrelia bacteriophage BB1 procapsid, fivefold-symmetrized outer shell
Descriptor: Decorator protein P03, Decorator protein P04, Decorator protein P05, ...
Authors:Rumnieks, J, Fuzik, T, Tars, K.
Deposit date:2023-06-26
Release date:2023-07-12
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Structure of the Borrelia Bacteriophage phi BB1 Procapsid.
J.Mol.Biol., 435, 2023
8PKL
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BU of 8pkl by Molmil
Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)
Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ...
Authors:Fluegel, T, Schacherl, M.
Deposit date:2023-06-26
Release date:2024-03-06
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (3.09 Å)
Cite:Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM.
Nat Commun, 15, 2024
8PM0
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BU of 8pm0 by Molmil
Influenza A/H7N9 polymerase in replicase-like conformation in pre-initiation state with Pol II pS5 CTD peptide mimic bound in site 1A/2A
Descriptor: 51-mer vRNA loop (v51_mut_S), MAGNESIUM ION, Polymerase acidic protein, ...
Authors:Arragain, B, Cusack, S.
Deposit date:2023-06-27
Release date:2024-02-21
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:The host RNA polymerase II C-terminal domain is the anchor for replication of the influenza virus genome.
Nat Commun, 15, 2024
8PME
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BU of 8pme by Molmil
Structure of Nal1 indica cultivar IR64, construct 88-458
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Narrow leaf 1, ...
Authors:Huang, L.Y, Rety, S, Xi, X.G.
Deposit date:2023-06-28
Release date:2024-04-17
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The catalytic triad of rice NARROW LEAF1 involves H234.
Nat.Plants, 10, 2024
8PMG
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BU of 8pmg by Molmil
Structure of Nal1 indica cultivar IR64, construct 36-458
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Huang, L.Y, Rety, S, Xi, X.G.
Deposit date:2023-06-28
Release date:2024-04-17
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (3.29 Å)
Cite:The catalytic triad of rice NARROW LEAF1 involves H234.
Nat.Plants, 10, 2024
8PMI
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BU of 8pmi by Molmil
Structure of Nal1 indica cultivar IR64, construct 36-458 in presence of peptide from FZP protein
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, AMMONIUM ION, MAGNESIUM ION, ...
Authors:Huang, L.Y, Rety, S, Xi, X.G.
Deposit date:2023-06-28
Release date:2024-04-17
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:The catalytic triad of rice NARROW LEAF1 involves H234.
Nat.Plants, 10, 2024
8PML
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BU of 8pml by Molmil
Structure of Nal1 protein , SPIKE allele from japonica rice, construct 46-458
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Protein NARROW LEAF 1
Authors:Huang, L.Y, Rety, S, Xi, X.G.
Deposit date:2023-06-29
Release date:2024-04-17
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:The catalytic triad of rice NARROW LEAF1 involves H234.
Nat.Plants, 10, 2024
8PMM
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BU of 8pmm by Molmil
Structure of Nal1 protein, allele SPIKE from japonica rice, construct 31-458
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Huang, L.Y, Rety, S, Xi, X.G.
Deposit date:2023-06-29
Release date:2024-04-17
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The catalytic triad of rice NARROW LEAF1 involves H234.
Nat.Plants, 10, 2024
8PMY
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BU of 8pmy by Molmil
HEV gt3 P domain in complex with glycan-insensitive nAb p60.15
Descriptor: Capsid protein, ZINC ION, scFv_p60.15
Authors:Ssebyatika, G, Krey, T.
Deposit date:2023-06-29
Release date:2024-07-10
Method:X-RAY DIFFRACTION (2.406 Å)
Cite:A novel class of broadly neutralizing hepatitis E virus-specific human antibodies
To Be Published
8PN0
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BU of 8pn0 by Molmil
HEV gt3 P domain in complex with glycan-sensitive nAb p60.12
Descriptor: Capsid protein, Fab_p60.12-HC, Fab_p60.12-LC
Authors:Ssebyatika, G, Krey, T.
Deposit date:2023-06-29
Release date:2024-07-10
Method:X-RAY DIFFRACTION (2.072 Å)
Cite:A novel class of broadly neutralizing hepatitis E virus-specific human antibodies
To Be Published

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PDB entries from 2024-09-11

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