Legacy flatfile-incompatible PDB entries

8OM8	X-ray structure of lysozyme obtained upon reaction with [VIVO(empp)2] (Structure A) Descriptor: 1-methyl-2-ethyl-3-hydroxy-4(1H)-pyridinone)V(IV)O4, ACETATE ION, CHLORIDE ION, ... Authors: Paolillo, M, Ferraro, G, Merlino, A. Deposit date: 2023-03-31 Release date: 2023-06-07 Method: X-RAY DIFFRACTION (1.08 Å) Cite: Implications of Protein Interaction in the Speciation of Potential V IV O-Pyridinone Drugs. Inorg.Chem., 62, 2023
8OMN	Carbonic Anhydrase II in Complex with Steriod_Sulphamoyl VK4 Descriptor: Carbonic anhydrase 2, ZINC ION, [(3~{R},5~{R},8~{R},9~{S},10~{S},13~{S},14~{S},17~{S})-17-ethanoyl-10,13-dimethyl-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1~{H}-cyclopenta[a]phenanthren-3-yl] sulfamate Authors: Brynda, J, Rezacova, P.M, Kudova, E. Deposit date: 2023-03-31 Release date: 2024-04-10 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Carbonic Anhydrase II in Complex with Steriod_Sulphamoyl To Be Published
8OMS	X-ray structure of lysozyme obtained upon reaction with [VIVO(empp)2] (Structure B) Descriptor: Lysozyme C, bis-[(1-methyl-2-ethyl-3-hydroxy-4(1H)-pyridinone)]-V(IV)O2 Authors: Paolillo, M, Ferraro, G, Merlino, A. Deposit date: 2023-03-31 Release date: 2023-06-07 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Implications of Protein Interaction in the Speciation of Potential V IV O-Pyridinone Drugs. Inorg.Chem., 62, 2023
8OMT	X-ray structure of lysozyme obtained upon reaction with [VIVO(empp)2] (Structure C) Descriptor: 1-methyl-2-ethyl-3-hydroxy-4(1H)-pyridinone)V(IV)O4, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Lysozyme C, ... Authors: Paolillo, M, Merlino, A, Ferraro, G. Deposit date: 2023-03-31 Release date: 2023-06-07 Method: X-RAY DIFFRACTION (1.097 Å) Cite: Implications of Protein Interaction in the Speciation of Potential V IV O-Pyridinone Drugs. Inorg.Chem., 62, 2023
8ONY	Human Methionine Aminopeptidase 2 at the 80S ribosome Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L19, ... Authors: Klein, M.A, Wild, K, Kisonaite, M, Sinning, I. Deposit date: 2023-04-04 Release date: 2024-02-21 Method: ELECTRON MICROSCOPY (2.92 Å) Cite: Methionine aminopeptidase 2 and its autoproteolysis product have different binding sites on the ribosome. Nat Commun, 15, 2024
8ONZ	Chaetomium thermophilum Methionine Aminopeptidase 2 at the 80S ribosome Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L25-like protein, ... Authors: Klein, M.A, Wild, K, Kisonaite, M, Sinning, I. Deposit date: 2023-04-04 Release date: 2024-02-21 Method: ELECTRON MICROSCOPY (2.94 Å) Cite: Methionine aminopeptidase 2 and its autoproteolysis product have different binding sites on the ribosome. Nat Commun, 15, 2024
8OO0	Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S0, ... Authors: Klein, M.A, Wild, K, Kisonaite, M, Sinning, I. Deposit date: 2023-04-04 Release date: 2024-02-21 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Methionine aminopeptidase 2 and its autoproteolysis product have different binding sites on the ribosome. Nat Commun, 15, 2024
8OO3	X-ray structure of the adduct formed upon reaction of cisplatin with human angiogenin after 5 days soaking Descriptor: AMMONIA, Angiogenin, D(-)-TARTARIC ACID, ... Authors: Ferraro, G, Merlino, A. Deposit date: 2023-04-04 Release date: 2023-07-12 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Cisplatin binding to angiogenin protein: new molecular pathways and targets for the drug's anticancer activity. Dalton Trans, 52, 2023
8OO4	X-ray structure of the adduct formed upon reaction of cisplatin with human angiogenin after 1 month soaking Descriptor: AMMONIA, Angiogenin, PLATINUM (II) ION Authors: Ferraro, G, Merlino, A. Deposit date: 2023-04-04 Release date: 2023-07-12 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.99 Å) Cite: Cisplatin binding to angiogenin protein: new molecular pathways and targets for the drug's anticancer activity. Dalton Trans, 52, 2023
8OO7	CryoEM Structure INO80core Hexasome complex composite model state1 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Actin-related protein 5, ... Authors: Zhang, M, Jungblut, A, Hoffmann, T, Eustermann, S. Deposit date: 2023-04-04 Release date: 2023-07-26 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Hexasome-INO80 complex reveals structural basis of noncanonical nucleosome remodeling. Science, 381, 2023
8OOC	CryoEM Structure INO80core Hexasome complex Rvb core refinement state1 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Chromatin-remodeling ATPase Ino80, ... Authors: Zhang, M, Jungblut, A, Hoffmann, T, Eustermann, S. Deposit date: 2023-04-05 Release date: 2023-08-02 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (2.93 Å) Cite: Hexasome-INO80 complex reveals structural basis of noncanonical nucleosome remodeling. Science, 381, 2023
8OOL	Glutamine synthetase from Methanothermococcus thermolithotrophicus with TbXo4 at a resolution of 1.65 A Descriptor: GLYCEROL, Glutamine synthetase from Methanothermococcus thermolithotrophicus, SULFATE ION, ... Authors: Mueller, M.-C, Wagner, T. Deposit date: 2023-04-05 Release date: 2024-01-24 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Differences in regulation mechanisms of glutamine synthetases from methanogenic archaea unveiled by structural investigations. Commun Biol, 7, 2024
8OON	Glutamine synthetase from Methanothermococcus thermolithotrophicus at a resolution of 2.43 A Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Glutamine synthetase from Methanothermococcus thermolithotrophicus, ... Authors: Mueller, M.-C, Lemaire, O.N, Wagner, T. Deposit date: 2023-04-05 Release date: 2024-01-24 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.43 Å) Cite: Differences in regulation mechanisms of glutamine synthetases from methanogenic archaea unveiled by structural investigations. Commun Biol, 7, 2024
8OOP	CryoEM Structure INO80core Hexasome complex composite model state2 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Actin-related protein 5, ... Authors: Zhang, M, Jungblut, A, Hoffmann, T, Eustermann, S. Deposit date: 2023-04-05 Release date: 2023-07-26 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Hexasome-INO80 complex reveals structural basis of noncanonical nucleosome remodeling. Science, 381, 2023
8OOQ	Glutamine synthetase from Methanothermococcus thermolithotrophicus in complex with 2-oxoglutarate and Mg at 2.91 A resolution Descriptor: 1,2-ETHANEDIOL, 2-OXOGLUTARIC ACID, DI(HYDROXYETHYL)ETHER, ... Authors: Mueller, M.-C, Wagner, T. Deposit date: 2023-04-05 Release date: 2024-01-24 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.91 Å) Cite: Differences in regulation mechanisms of glutamine synthetases from methanogenic archaea unveiled by structural investigations. Commun Biol, 7, 2024
8OOR	CryoEM Structure INO80core Hexasome complex Rvb core refinement state2 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Actin-related protein 5, ... Authors: Zhang, M, Jungblut, A, Hoffmann, T, Eustermann, S. Deposit date: 2023-04-05 Release date: 2023-07-26 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (2.87 Å) Cite: Hexasome-INO80 complex reveals structural basis of noncanonical nucleosome remodeling. Science, 381, 2023
8OOW	Glutamine synthetase from Methermicoccus shengliensis at a resolution of 2.64 A Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Glutamine synthetase, ... Authors: Mueller, M.-C, Lemaire, O.N, Wagner, T. Deposit date: 2023-04-06 Release date: 2024-01-24 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.64 Å) Cite: Differences in regulation mechanisms of glutamine synthetases from methanogenic archaea unveiled by structural investigations. Commun Biol, 7, 2024
8OOX	Glutamine synthetase from Methermicoccus shengliensis at a resolution of 3.09 A Descriptor: CITRIC ACID, GLYCEROL, Glutamine synthetase, ... Authors: Mueller, M.-C, Lemaire, O.N, Wagner, T. Deposit date: 2023-04-06 Release date: 2024-01-24 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (3.09 Å) Cite: Differences in regulation mechanisms of glutamine synthetases from methanogenic archaea unveiled by structural investigations. Commun Biol, 7, 2024
8OOZ	Glutamine synthetase from Methermicoccus shengliensis in complex with MgATP at 2.7 A resolution Descriptor: ADENOSINE-5'-TRIPHOSPHATE, FORMIC ACID, GLYCEROL, ... Authors: Mueller, M.-C, Lemaire, O.N, Wagner, T. Deposit date: 2023-04-06 Release date: 2024-01-24 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Differences in regulation mechanisms of glutamine synthetases from methanogenic archaea unveiled by structural investigations. Commun Biol, 7, 2024
8OPA	Virus-like Particle based on PVY coat protein with stacked-ring architecture Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (3.34 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPB	Virus-like Particle based on PVY coat protein with RNA-free helical architecture Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-02-14 Method: ELECTRON MICROSCOPY (3.58 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPC	Virus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNA Descriptor: Genome polyprotein (Fragment), RNA (5'-R(P*UP*UP*UP*UP*U)-3') Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (2.99 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPD	Virus-like Particle based on PVY coat protein with dC40 deletion with stacked-ring architecture Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPE	Virus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNA Descriptor: Genome polyprotein (Fragment), RNA (5'-R(P*UP*UP*UP*UP*U)-3') Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (3.09 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPF	Virus-like Particle based on PVY coat protein with dC60 deletion with RNA-free helical architecture Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024

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