sequence-representative

Sequence representative lists are generated by first computing BLAST scores for all pairs of structures. The pairs which score above a certain threshold (Sequence identity30% and E-value0.1) arelinked. The set is first clustered using single-linkage clustering. Then, these clusters are partitioned by the following iterative procedure:

1. The structure with the greatest number of links is chosen, and a new cluster defined with it as the representative and all of its links members.

2. The representative and all its members are removed and step 1 is repeated until there are no members left.