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The PDBx/mmJSON file format is a JSON representation of the PDBx/mmCIF data developed by PDBj. The following services use the mmJSON format directly:
  • Mine PDB Explorer
  • Mine CIF Query service
  • Molmil
  • CIF tree tool
Implementation details and PDBx/mmCIF parsers which can be used to build mmjson files can be found on GitHub.

PDBj also provides the mmjson files of the PDB, chem_comp, chem_comp models and PRD/BIRD entries via our FTP site and can e.g. be retrieved via rsync from the following locations:

PDB entriesallftp://ftp.pdbj.org/mine2/data/mmjson/all/
noatomftp://ftp.pdbj.org/mine2/data/mmjson/noatom/
add onlyftp://ftp.pdbj.org/mine2/data/mmjson/plus-add/
add+noatomftp://ftp.pdbj.org/mine2/data/mmjson/plus-noatom/
lite version for large structuresftp://ftp.pdbj.org/mine2/data/mmjson/lite/
Chem_comp entriesftp://ftp.pdbj.org/mine2/data/cc/mmjson/
Chem_comp model entriesftp://ftp.pdbj.org/mine2/data/ccmodel/mmjson/
PRD/BIRD entriesftp://ftp.pdbj.org/mine2/data/prd/mmjson/
Created: 2014-08-21 (last edited: more than 1 year ago)2018-09-26