Obtain the PDBID + ChainID (auth_asym_id) of the entries containing the sequence \
Search from here
SELECT b.pdbid, e.pdbx_strand_id FROM entity_poly e LEFT JOIN brief_summary b ON e.pdbid=b.pdbid WHERE e.pdbx_seq_one_letter_code LIKE '%TVSFSWNKFVPKQPNMILQGDAIVTSSGKLQLNKVDENGTPKPSSLGR%' AND b.biol_species LIKE '%Glycine max%'
- To use brief_summary table is convenient because the category that biological resource information is described is vary according to get the molecule.
- If ChainID is not necessary, it is enough to refer brief_summary.aaseq, which includes all the sequence information in each PDB entry.
Element | Contents |
---|---|
entity_src_nat | The biological resource information when the molecule is derived from the species directly. |
entity_src_nat | The biological resource information when the molecule is derived by using another host species. |
pdbx_entity_src_syn | The biological resource information when the molecule is synthesized. |
brief_summary.biol_species | The value that is concatenated all the species name in each PDB entry. |
entity_poly.pdbx_seq_one_letter_code | The amino acid or nucleic acid sequence in each PDB entry. |
brief_summary.aaseq | The value that is concatenated all the sequence in each PDB entry. |
Created: 2018-06-13 (last edited: more than 1 year ago)