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Yorodumi- PDB-2yht: Crystal structure of Hfq riboregulator from E. coli (P1 space group) -
+Open data
-Basic information
Entry | Database: PDB / ID: 2yht | ||||||
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Title | Crystal structure of Hfq riboregulator from E. coli (P1 space group) | ||||||
Components | PROTEIN HFQ | ||||||
Keywords | CHAPERONE / RNA CHAPERONE | ||||||
Function / homology | Function and homology information sRNA-mediated post-transcriptional gene silencing / positive regulation of translation, ncRNA-mediated / RNA folding chaperone / regulation of translation, ncRNA-mediated / bacterial nucleoid / bent DNA binding / regulation of RNA stability / tRNA processing / tRNA binding / regulation of DNA-templated transcription ...sRNA-mediated post-transcriptional gene silencing / positive regulation of translation, ncRNA-mediated / RNA folding chaperone / regulation of translation, ncRNA-mediated / bacterial nucleoid / bent DNA binding / regulation of RNA stability / tRNA processing / tRNA binding / regulation of DNA-templated transcription / DNA binding / RNA binding / ATP binding / cytosol Similarity search - Function | ||||||
Biological species | ESCHERICHIA COLI (E. coli) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.9 Å | ||||||
Authors | Basquin, J. / Sauter, C. | ||||||
Citation | Journal: Cryst.Growth Des. / Year: 2011 Title: Exploiting Protein Engineering and Crystal Polymorphism for Successful X-Ray Structure Determination Authors: Bonnefond, L. / Schellenberger, P. / Basquin, J. / Demangeat, G. / Ritzenthaler, C. / Chenevert, R. / Balg, C. / Frugier, M. / Rudinger-Thirion, J. / Giege, R. / Lorber, B. / Sauter, C. #1: Journal: Nucleic Acids Res. / Year: 2003 Title: Sm-Like Proteins in Eubacteria: The Crystal Structure of the Hfq Protein from Escherichia Coli. Authors: Sauter, C. / Basquin, J. / Suck, D. | ||||||
History |
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Remark 700 | SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS BELOW ... SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 30-STRANDED BARREL THIS IS REPRESENTED BY A 31-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS "GA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 30-STRANDED BARREL THIS IS REPRESENTED BY A 31-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. |
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2yht.cif.gz | 156.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2yht.ent.gz | 125.4 KB | Display | PDB format |
PDBx/mmJSON format | 2yht.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2yht_validation.pdf.gz | 476.4 KB | Display | wwPDB validaton report |
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Full document | 2yht_full_validation.pdf.gz | 488.7 KB | Display | |
Data in XML | 2yht_validation.xml.gz | 25.1 KB | Display | |
Data in CIF | 2yht_validation.cif.gz | 35.6 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/yh/2yht ftp://data.pdbj.org/pub/pdb/validation_reports/yh/2yht | HTTPS FTP |
-Related structure data
Related structure data | 2y90SC 3zxiC 4v5wC S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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