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Yorodumi- PDB-7dcs: Crystal structure of HSF1 DNA-binding domain in complex with 3-si... -
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Basic information
| Entry | Database: PDB / ID: 7dcs | ||||||
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| Title | Crystal structure of HSF1 DNA-binding domain in complex with 3-site HSE DNA (23 bp) | ||||||
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Keywords | DNA BINDING PROTEIN/DNA / DNA BINDING PROTEIN-DNA COMPLEX | ||||||
| Function / homology | Function and homology informationcellular response to nitroglycerin / sequence-specific single stranded DNA binding / embryonic process involved in female pregnancy / cellular response to diamide / response to hypobaric hypoxia / cellular response to L-glutamine / positive regulation of stress granule assembly / negative regulation of double-strand break repair via nonhomologous end joining / positive regulation of apoptotic DNA fragmentation / response to peptide ...cellular response to nitroglycerin / sequence-specific single stranded DNA binding / embryonic process involved in female pregnancy / cellular response to diamide / response to hypobaric hypoxia / cellular response to L-glutamine / positive regulation of stress granule assembly / negative regulation of double-strand break repair via nonhomologous end joining / positive regulation of apoptotic DNA fragmentation / response to peptide / cellular response to sodium arsenite / translation elongation factor binding / negative regulation of inclusion body assembly / nuclear stress granule / female meiotic nuclear division / positive regulation of macrophage differentiation / positive regulation of inclusion body assembly / positive regulation of multicellular organism growth / pronucleus / cellular response to potassium ion / protein folding chaperone complex / negative regulation of cardiac muscle cell apoptotic process / RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding / response to psychosocial stress / STAT family protein binding / mitotic spindle pole / response to testosterone / cellular response to cadmium ion / cellular response to angiotensin / general transcription initiation factor binding / negative regulation of tumor necrosis factor production / Regulation of HSF1-mediated heat shock response / cellular response to unfolded protein / HSF1-dependent transactivation / Mitochondrial unfolded protein response (UPRmt) / mRNA transport / HSF1 activation / embryonic placenta development / Attenuation phase / negative regulation of protein-containing complex assembly / heterochromatin / regulation of cellular response to heat / heat shock protein binding / response to nutrient / positive regulation of mitotic cell cycle / cellular response to copper ion / epithelial cell proliferation / positive regulation of apoptotic signaling pathway / response to activity / promoter-specific chromatin binding / Hsp90 protein binding / cellular response to estradiol stimulus / cellular response to gamma radiation / euchromatin / defense response / PML body / chromatin DNA binding / kinetochore / DNA-binding transcription repressor activity, RNA polymerase II-specific / cellular response to xenobiotic stimulus / cellular response to hydrogen peroxide / mRNA processing / negative regulation of epithelial cell proliferation / Aggrephagy / sequence-specific double-stranded DNA binding / MAPK cascade / positive regulation of cold-induced thermogenesis / cellular response to heat / cellular response to lipopolysaccharide / protein-containing complex assembly / DNA-binding transcription activator activity, RNA polymerase II-specific / spermatogenesis / sequence-specific DNA binding / DNA-binding transcription factor activity, RNA polymerase II-specific / transcription cis-regulatory region binding / RNA polymerase II cis-regulatory region sequence-specific DNA binding / DNA-binding transcription factor activity / ribonucleoprotein complex / protein heterodimerization activity / DNA repair / centrosome / positive regulation of gene expression / regulation of transcription by RNA polymerase II / protein kinase binding / chromatin / perinuclear region of cytoplasm / negative regulation of transcription by RNA polymerase II / positive regulation of transcription by RNA polymerase II / DNA binding / nucleoplasm / identical protein binding / nucleus / cytoplasm / cytosol Similarity search - Function | ||||||
| Biological species | Homo sapiens (human) | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.4 Å | ||||||
Authors | Feng, N. / Liu, W. | ||||||
Citation | Journal: Iscience / Year: 2021Title: Structures of heat shock factor trimers bound to DNA. Authors: Feng, N. / Feng, H. / Wang, S. / Punekar, A.S. / Ladenstein, R. / Wang, D.C. / Zhang, Q. / Ding, J. / Liu, W. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 7dcs.cif.gz | 365.9 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb7dcs.ent.gz | 293.9 KB | Display | PDB format |
| PDBx/mmJSON format | 7dcs.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 7dcs_validation.pdf.gz | 498.2 KB | Display | wwPDB validaton report |
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| Full document | 7dcs_full_validation.pdf.gz | 506.6 KB | Display | |
| Data in XML | 7dcs_validation.xml.gz | 29.9 KB | Display | |
| Data in CIF | 7dcs_validation.cif.gz | 43 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/dc/7dcs ftp://data.pdbj.org/pub/pdb/validation_reports/dc/7dcs | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 7dcjC ![]() 7dctC ![]() 7dcuC ![]() 5hdgS S: Starting model for refinement C: citing same article ( |
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| Similar structure data |
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Assembly
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| Noncrystallographic symmetry (NCS) | NCS domain:
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Homo sapiens (human)
X-RAY DIFFRACTION
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