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- PDB-7auf: anammox-specific acyl carrier protein from Kuenenia stuttgartiens... -
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Open data
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Basic information
Entry | Database: PDB / ID: 7auf | ||||||
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Title | anammox-specific acyl carrier protein from Kuenenia stuttgartiensis; normal refinement | ||||||
![]() | Similar to acyl carrier protein | ||||||
![]() | LIPID BINDING PROTEIN / acyl carrier protein / ladderanes / anammox / fatty acid biosynthesis | ||||||
Function / homology | Phosphopantetheine attachment site / ACP-like superfamily / Carrier protein (CP) domain profile. / Phosphopantetheine binding ACP domain / Putative acyl carrier protein![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Dietl, A. / Barends, T. | ||||||
Funding support | European Union, 1items
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![]() | ![]() Title: Dynamics in an unusual acyl carrier protein from a ladderane lipid-synthesizing organism. Authors: Dietl, A. / Barends, T.R.M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 77.9 KB | Display | ![]() |
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PDB format | ![]() | 49.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 306.6 KB | Display | ![]() |
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Full document | ![]() | 307.7 KB | Display | |
Data in XML | ![]() | 6.4 KB | Display | |
Data in CIF | ![]() | 7.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 10732.137 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() | ||||
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#2: Chemical | ChemComp-ZN / #3: Water | ChemComp-HOH / | Has ligand of interest | N | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.45 Å3/Da / Density % sol: 49.83 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 4.5 Details: 28% (v/v) PEG 400, 200 mM calcium acetate, 100 mM sodium acetate pH 4.5 and 10 mM zinc chloride. |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 S 6M / Detector: PIXEL / Date: Aug 28, 2015 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 1.76→38.4 Å / Num. obs: 13924 / % possible obs: 91.6 % / Redundancy: 5.3 % / Biso Wilson estimate: 32.33 Å2 / Rpim(I) all: 0.025 / Net I/σ(I): 16.4 |
Reflection shell | Resolution: 1.76→1.9 Å / Num. unique obs: 1123 / Rpim(I) all: 0.652 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 57.52 Å2 | ||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.76→38.4 Å
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Refine LS restraints |
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LS refinement shell |
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Refinement TLS params. | Method: refined / Origin x: 3.25345848326 Å / Origin y: 27.6610982052 Å / Origin z: 0.822406768215 Å
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Refinement TLS group | Selection details: (chain 'A' and resid 2 through 91) |