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- PDB-6xia: REFINEMENT OF GLUCOSE ISOMERASE FROM STREPTOMYCES ALBUS AT 1.65 A... -
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Open data
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Basic information
Entry | Database: PDB / ID: 6xia | ||||||
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Title | REFINEMENT OF GLUCOSE ISOMERASE FROM STREPTOMYCES ALBUS AT 1.65 ANGSTROMS WITH DATA FROM AN IMAGING PLATE | ||||||
![]() | D-XYLOSE ISOMERASE | ||||||
![]() | ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE) | ||||||
Function / homology | ![]() xylose isomerase / D-xylose metabolic process / xylose isomerase activity / magnesium ion binding / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() | ||||||
![]() | Dauter, Z. / Terry, H. / Wilson, K.S. | ||||||
![]() | ![]() Title: Refinement of glucose isomerase from Streptomyces albus at 1.65 A with data from an imaging plate. Authors: Dauter, Z. / Terry, H. / Witzel, H. / Wilson, K.S. #1: ![]() Title: Crystallization and Preliminary Analysis of Glucose Isomerase from Streptomyces Albus Authors: Dauter, Z. / Dauter, M. / Hemker, J. / Witzel, H. / Wilson, K.S. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 98.5 KB | Display | ![]() |
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PDB format | ![]() | 74.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 415.8 KB | Display | ![]() |
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Full document | ![]() | 427.4 KB | Display | |
Data in XML | ![]() | 21.6 KB | Display | |
Data in CIF | ![]() | 33.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Atom site foot note | 1: RESIDUE 186 IS A CIS PROLINE. 2: ATOMS WITH AN OCCUPANCY OF 0.0 WERE NOT LOCATED IN THE ELECTRON DENSITY MAPS. | |||||||||
Components on special symmetry positions |
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Components
#1: Protein | Mass: 43131.059 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.79 Å3/Da / Density % sol: 55.92 % | ||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 277 K / pH: 7.5 / Method: batch method | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Reflection | *PLUS Highest resolution: 1.65 Å / Num. obs: 54575 / % possible obs: 94.6 % / Observed criterion σ(I): 3 / Num. measured all: 224189 / Rmerge(I) obs: 0.126 / Biso Wilson estimate: 14.3 Å2 |
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Reflection shell | *PLUS Highest resolution: 0.165 Å / Rmerge(I) obs: 0.126 |
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Processing
Software | Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Resolution: 1.65→8 Å Details: ATOMS WITH AN OCCUPANCY OF 0.0 WERE NOT LOCATED IN THE ELECTRON DENSITY MAPS.
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Refinement step | Cycle: LAST / Resolution: 1.65→8 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 1.65 Å / Lowest resolution: 8 Å / Rfactor obs: 0.141 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS Biso mean: 20 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS Type: p_dihedral_angle_d / Dev ideal target: 5 |