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Open data
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Basic information
Entry | Database: PDB / ID: 6p5h | ||||||
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Title | Structure of MavC middle insertion domain | ||||||
![]() | MavC | ||||||
![]() | PROTEIN BINDING / UbE2N / Effector / MavC | ||||||
Function / homology | Uncharacterized protein / Uncharacterized protein![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Negron Teron, K.I. / Puvar, K. / Iyer, S. / Das, C. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Legionella effector MavC targets the Ube2N~Ub conjugate for noncanonical ubiquitination. Authors: Puvar, K. / Iyer, S. / Fu, J. / Kenny, S. / Negron Teron, K.I. / Luo, Z.Q. / Brzovic, P.S. / Klevit, R.E. / Das, C. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 62.8 KB | Display | ![]() |
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PDB format | ![]() | 43.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 420.5 KB | Display | ![]() |
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Full document | ![]() | 421.9 KB | Display | |
Data in XML | ![]() | 13.6 KB | Display | |
Data in CIF | ![]() | 20.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6p5bC ![]() 6ulhC ![]() 6umpC ![]() 6umsC ![]() 5tscS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 12248.795 Da / Num. of mol.: 2 / Fragment: middle insertion domain Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.7 Å3/Da / Density % sol: 54.47 % |
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Crystal grow | Temperature: 294 K / Method: vapor diffusion, hanging drop / pH: 10.5 Details: 2 M ammonium sulfate, 0.2 M lithium sulfate, 0.1 M CAPS: NaOH |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: RAYONIX MX-300 / Detector: CCD / Date: Oct 27, 2018 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.978772 Å / Relative weight: 1 |
Reflection | Resolution: 1.53→39.229 Å / Num. obs: 36418 / % possible obs: 99.96 % / Redundancy: 8.2 % / Net I/σ(I): 24.9 |
Reflection shell | Resolution: 1.53→1.585 Å / Num. unique obs: 3636 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 5TSC Resolution: 1.53→39.229 Å / SU ML: 0.17 / Cross valid method: THROUGHOUT / σ(F): 2.02 / Phase error: 24.66
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.53→39.229 Å
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Refine LS restraints |
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LS refinement shell |
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