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- PDB-6n41: Crystal structure of InvbM.18715.a.KN11: Influenza hemagglutinin ... -

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Basic information

Entry
Database: PDB / ID: 6n41
TitleCrystal structure of InvbM.18715.a.KN11: Influenza hemagglutinin from strain A/Netherlands/002P1/1951
ComponentsHemagglutinin
KeywordsVIRAL PROTEIN / Inflenza hemagglutinin / Structural Genomics / Seattle Structural Genomics Center for Infectious Disease / SSGCID
Function / homology
Function and homology information


viral budding from plasma membrane / clathrin-dependent endocytosis of virus by host cell / membrane => GO:0016020 / host cell surface receptor binding / apical plasma membrane / fusion of virus membrane with host plasma membrane / fusion of virus membrane with host endosome membrane / viral envelope / virion attachment to host cell / host cell plasma membrane / virion membrane
Similarity search - Function
Hemagglutinin (Ha1 Chain); Chain: A; domain 1 / Haemagglutinin, alpha/beta domain, HA1 chain / Haemagglutinin, influenzavirus A / Haemagglutinin, HA1 chain, alpha/beta domain superfamily / Haemagglutinin / Haemagglutinin, influenzavirus A/B / Viral capsid/haemagglutinin protein / Alpha-Beta Complex / Alpha Beta
Similarity search - Domain/homology
DI(HYDROXYETHYL)ETHER / Hemagglutinin
Similarity search - Component
Biological speciesInfluenza A virus
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / molecular replacement / Resolution: 2.5 Å
AuthorsSeattle Structural Genomics Center for Infectious Disease (SSGCID)
CitationJournal: Sci Rep / Year: 2023
Title: Structural characterisation of hemagglutinin from seven Influenza A H1N1 strains reveal diversity in the C05 antibody recognition site.
Authors: Ghafoori, S.M. / Petersen, G.F. / Conrady, D.G. / Calhoun, B.M. / Stigliano, M.Z.Z. / Baydo, R.O. / Grice, R. / Abendroth, J. / Lorimer, D.D. / Edwards, T.E. / Forwood, J.K.
History
DepositionNov 16, 2018Deposition site: RCSB / Processing site: RCSB
Revision 1.0Dec 5, 2018Provider: repository / Type: Initial release
Revision 2.0Jul 29, 2020Group: Atomic model / Data collection ...Atomic model / Data collection / Derived calculations / Structure summary
Category: atom_site / chem_comp ...atom_site / chem_comp / entity / pdbx_branch_scheme / pdbx_chem_comp_identifier / pdbx_entity_branch / pdbx_entity_branch_descriptor / pdbx_entity_branch_link / pdbx_entity_branch_list / pdbx_entity_nonpoly / pdbx_nonpoly_scheme / pdbx_struct_assembly_gen / struct_asym / struct_conn / struct_site / struct_site_gen
Item: _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ..._atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _atom_site.auth_asym_id / _atom_site.auth_atom_id / _atom_site.auth_comp_id / _atom_site.auth_seq_id / _atom_site.label_asym_id / _atom_site.label_atom_id / _atom_site.label_comp_id / _atom_site.label_entity_id / _atom_site.type_symbol / _chem_comp.name / _chem_comp.type / _pdbx_struct_assembly_gen.asym_id_list / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_role / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id
Description: Carbohydrate remediation / Provider: repository / Type: Remediation
Revision 2.1May 24, 2023Group: Database references / Derived calculations / Structure summary
Category: chem_comp / citation ...chem_comp / citation / citation_author / database_2 / struct_conn
Item: _chem_comp.pdbx_synonyms / _citation.country ..._chem_comp.pdbx_synonyms / _citation.country / _citation.journal_abbrev / _citation.journal_id_CSD / _citation.journal_id_ISSN / _citation.journal_volume / _citation.page_first / _citation.page_last / _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation.title / _citation.year / _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_conn.pdbx_leaving_atom_flag

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Assembly

Deposited unit
A: Hemagglutinin
B: Hemagglutinin
C: Hemagglutinin
hetero molecules


Theoretical massNumber of molelcules
Total (without water)176,83036
Polymers169,2693
Non-polymers7,56133
Water4,252236
1


  • Idetical with deposited unit
  • defined by author&software
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area23950 Å2
ΔGint99 kcal/mol
Surface area58300 Å2
MethodPISA
Unit cell
Length a, b, c (Å)70.280, 123.410, 119.970
Angle α, β, γ (deg.)90.000, 95.540, 90.000
Int Tables number4
Space group name H-MP1211
Noncrystallographic symmetry (NCS)NCS domain:
IDEns-IDDetails
11(chain A and ((resid 2 and (name N or name...
21(chain B and ((resid 2 and (name N or name...
31(chain C and (resid 2 through 23 or (resid 24...

NCS domain segments:
Dom-IDComponent-IDEns-IDSelection detailsAuth asym-IDAuth seq-ID
111(chain A and ((resid 2 and (name N or name...A2
121(chain A and ((resid 2 and (name N or name...A2 - 601
131(chain A and ((resid 2 and (name N or name...A2 - 601
141(chain A and ((resid 2 and (name N or name...A2 - 601
151(chain A and ((resid 2 and (name N or name...A2 - 601
211(chain B and ((resid 2 and (name N or name...B2
221(chain B and ((resid 2 and (name N or name...B2 - 508
231(chain B and ((resid 2 and (name N or name...B2 - 508
241(chain B and ((resid 2 and (name N or name...B2 - 508
251(chain B and ((resid 2 and (name N or name...B2 - 508
311(chain C and (resid 2 through 23 or (resid 24...C2 - 23
321(chain C and (resid 2 through 23 or (resid 24...C24
331(chain C and (resid 2 through 23 or (resid 24...C2 - 511
341(chain C and (resid 2 through 23 or (resid 24...C2 - 511
351(chain C and (resid 2 through 23 or (resid 24...C2 - 511

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Components

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Protein , 1 types, 3 molecules ABC

#1: Protein Hemagglutinin /


Mass: 56422.914 Da / Num. of mol.: 3
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Influenza A virus / Strain: A/Netherlands/002P1/1951(H1N1) / Gene: HA / Production host: Spodoptera frugiperda (fall armyworm) / Strain (production host): Sf9 / References: UniProt: E6XTV3

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Sugars , 5 types, 17 molecules

#2: Polysaccharide beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta- ...beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose


Type: oligosaccharide / Mass: 586.542 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
DescriptorTypeProgram
DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-Glycam Condensed SequenceGMML 1.0
WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1WURCSPDB2Glycan 1.1.0
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}LINUCSPDB-CARE
#3: Polysaccharide
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose


Type: oligosaccharide / Mass: 424.401 Da / Num. of mol.: 4
Source method: isolated from a genetically manipulated source
DescriptorTypeProgram
DGlcpNAcb1-4DGlcpNAcb1-Glycam Condensed SequenceGMML 1.0
WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1WURCSPDB2Glycan 1.1.0
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}LINUCSPDB-CARE
#4: Polysaccharide alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2- ...alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose


Type: oligosaccharide / Mass: 910.823 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
DescriptorTypeProgram
DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-Glycam Condensed SequenceGMML 1.0
WURCS=2.0/3,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3/a4-b1_b4-c1_c3-d1_c6-e1WURCSPDB2Glycan 1.1.0
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}}}LINUCSPDB-CARE
#5: Polysaccharide alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D- ...alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose


Type: oligosaccharide / Mass: 1072.964 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
DescriptorTypeProgram
DManpa1-3DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-Glycam Condensed SequenceGMML 1.0
WURCS=2.0/3,6,5/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3-3/a4-b1_b4-c1_c3-d1_c6-e1_e3-f1WURCSPDB2Glycan 1.1.0
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{[(3+1)][a-D-Manp]{}}}}}}LINUCSPDB-CARE
#6: Sugar
ChemComp-NAG / 2-acetamido-2-deoxy-beta-D-glucopyranose / N-acetyl-beta-D-glucosamine / 2-acetamido-2-deoxy-beta-D-glucose / 2-acetamido-2-deoxy-D-glucose / 2-acetamido-2-deoxy-glucose / N-ACETYL-D-GLUCOSAMINE / N-Acetylglucosamine


Type: D-saccharide, beta linking / Mass: 221.208 Da / Num. of mol.: 10
Source method: isolated from a genetically manipulated source
Formula: C8H15NO6
IdentifierTypeProgram
DGlcpNAcbCONDENSED IUPAC CARBOHYDRATE SYMBOLGMML 1.0
N-acetyl-b-D-glucopyranosamineCOMMON NAMEGMML 1.0
b-D-GlcpNAcIUPAC CARBOHYDRATE SYMBOLPDB-CARE 1.0
GlcNAcSNFG CARBOHYDRATE SYMBOLGMML 1.0

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Non-polymers , 3 types, 252 molecules

#7: Chemical ChemComp-PEG / DI(HYDROXYETHYL)ETHER / Diethylene glycol


Mass: 106.120 Da / Num. of mol.: 2 / Source method: obtained synthetically / Formula: C4H10O3
#8: Chemical
ChemComp-EDO / 1,2-ETHANEDIOL / ETHYLENE GLYCOL / Ethylene glycol


Mass: 62.068 Da / Num. of mol.: 14 / Source method: obtained synthetically / Formula: C2H6O2
#9: Water ChemComp-HOH / water / Water


Mass: 18.015 Da / Num. of mol.: 236 / Source method: isolated from a natural source / Formula: H2O

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

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Sample preparation

CrystalDensity Matthews: 3.06 Å3/Da / Density % sol: 59.79 %
Crystal growTemperature: 289 K / Method: vapor diffusion, sitting drop / pH: 9
Details: SEC purified InvbM.18715.a.KN11.PD38309 at 10.4mg/ml (in 25mM TRIS pH 8, 150mM NaCl) was crystallized by sitting drop vapor diffusion at 14C with an equal volume (0.1:0.1uL) of protein: ...Details: SEC purified InvbM.18715.a.KN11.PD38309 at 10.4mg/ml (in 25mM TRIS pH 8, 150mM NaCl) was crystallized by sitting drop vapor diffusion at 14C with an equal volume (0.1:0.1uL) of protein:mother liquor (0.1M MMT buffer pH9, 27.5% PEG1500), then cyoprotected in mother liquor+15% ethylene glycol, before being flash-frozen for data collection. Crystal ID 304301a12 data set xee7-4

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Data collection

DiffractionMean temperature: 100 K / Serial crystal experiment: N
Diffraction sourceSource: SYNCHROTRON / Site: APS / Beamline: 21-ID-F / Wavelength: 0.97872 Å
DetectorType: RAYONIX MX-300 / Detector: CCD / Date: Oct 25, 2018
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.97872 Å / Relative weight: 1
ReflectionResolution: 2.5→46.274 Å / Num. obs: 70379 / % possible obs: 99.9 % / Redundancy: 4.271 % / Biso Wilson estimate: 50.901 Å2 / CC1/2: 0.997 / Rmerge(I) obs: 0.092 / Rrim(I) all: 0.106 / Χ2: 1.035 / Net I/σ(I): 12.09 / Num. measured all: 300573 / Scaling rejects: 24
Reflection shell

Diffraction-ID: 1

Resolution (Å)Redundancy (%)Rmerge(I) obsMean I/σ(I) obsNum. measured obsNum. possibleNum. unique obsCC1/2Rrim(I) all% possible all
2.5-2.564.2940.7912.1122181516751650.8130.904100
2.56-2.644.3060.6792.4421786506750600.8710.77599.9
2.64-2.714.3020.542321340496549610.8970.61999.9
2.71-2.84.3160.4313.6320512475747520.9360.49299.9
2.8-2.894.2970.3564.319849462346190.9510.40799.9
2.89-2.994.3070.2925.2219260448044720.9650.33499.8
2.99-3.14.2920.2286.4818552432343220.9780.26100
3.1-3.234.2960.1738.2617999419341900.9840.19899.9
3.23-3.374.2780.13410.4317087399639940.990.15399.9
3.37-3.544.2810.10412.7616381383138260.9930.11999.9
3.54-3.734.2650.08315.7115519364136390.9950.09599.9
3.73-3.954.2580.06918.0914588342834260.9970.07899.9
3.95-4.234.2690.05521.6713814324032360.9970.06399.9
4.23-4.564.2390.04624.9412854303130320.9980.053100
4.56-54.2290.04426.6711764278227820.9980.05100
5-5.594.2330.04526.0110599250725040.9980.05199.9
5.59-6.464.2080.04426.199401223722340.9980.05199.9
6.46-7.914.1760.03928.547909189418940.9980.045100
7.91-11.184.1240.02835.776042146514650.9990.032100
11.18-46.2743.8910.02737.6331368298060.9990.03197.2

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Phasing

PhasingMethod: molecular replacement

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Processing

Software
NameVersionClassificationNB
XDSdata reduction
XSCALEdata scaling
PHASERphasing
PHENIXdev_3297refinement
PDB_EXTRACT3.24data extraction
RefinementMethod to determine structure: MOLECULAR REPLACEMENT / Resolution: 2.5→46.274 Å / SU ML: 0.36 / Cross valid method: THROUGHOUT / σ(F): 1.35 / Phase error: 28.03 / Stereochemistry target values: ML
RfactorNum. reflection% reflection
Rfree0.2355 2032 2.89 %
Rwork0.187 68283 -
obs0.1884 70315 99.82 %
Solvent computationShrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL
Displacement parametersBiso max: 147.97 Å2 / Biso mean: 61.3922 Å2 / Biso min: 21.54 Å2
Refinement stepCycle: final / Resolution: 2.5→46.274 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms11101 0 494 236 11831
Biso mean--91.37 49.9 -
Num. residues----1448
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-IDNumberRefine-IDRmsType
11A6566X-RAY DIFFRACTION11.511TORSIONAL
12B6566X-RAY DIFFRACTION11.511TORSIONAL
13C6566X-RAY DIFFRACTION11.511TORSIONAL
LS refinement shell

Refine-ID: X-RAY DIFFRACTION / Rfactor Rfree error: 0 / Total num. of bins used: 15 / % reflection obs: 100 %

Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkNum. reflection all
2.5-2.55820.36261260.291545094635
2.5582-2.62220.32441420.27145394681
2.6222-2.6930.31111430.252945064649
2.693-2.77230.32621380.239645194657
2.7723-2.86170.27981280.22845504678
2.8617-2.9640.3241310.222845404671
2.964-3.08270.27411170.212745804697
3.0827-3.22290.26241400.209745414681
3.2229-3.39280.30341310.19645334664
3.3928-3.60530.25661320.186945524684
3.6053-3.88350.23961430.175845784721
3.8835-4.27410.19311430.152445514694
4.2741-4.8920.17481380.137545594697
4.892-6.16110.19991370.166245834720
6.1611-46.28230.1931430.182846434786
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL11 (°2)L12 (°2)L13 (°2)L22 (°2)L23 (°2)L33 (°2)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2)T12 (Å2)T13 (Å2)T22 (Å2)T23 (Å2)T33 (Å2)Origin x (Å)Origin y (Å)Origin z (Å)
10.5174-0.01890.90520.2021-0.32553.2567-0.3150.2850.2931-0.23440.08150.0008-0.99050.33520.24631.025-0.1545-0.25290.55190.06150.531429.828712.93929.9675
21.9842-0.287-0.35261.59910.24961.8212-0.1979-0.37670.1930.21440.0979-0.1614-0.22770.13950.10230.47510.0109-0.17080.4165-0.08670.367134.2739-0.252266.2728
30.5281-0.21060.2260.13790.50586.5739-0.25270.33090.3442-0.2276-0.0080.0268-1.3855-0.00390.31170.8675-0.0729-0.20860.54560.02560.538827.537312.179836.4244
41.0165-0.35421.12581.7929-1.04422.5292-0.46230.28840.3366-0.49080.060.159-1.03860.01160.23841.1326-0.0317-0.33830.63050.07370.482516.089213.0673.2443
50.7721-0.49911.48450.7139-0.93034.0538-0.0719-0.1251-0.0835-0.13150.21670.3586-0.187-1.1295-0.23620.39410.1056-0.12610.7242-0.03690.474-1.5624-10.852228.2329
61.9109-0.48480.55382.9483-0.26063.64130.0559-0.305-0.20350.41550.08970.06640.2715-0.4131-0.13170.2903-0.0303-0.04560.37860.03310.30915.6566-26.487463.5296
71.5406-1.24631.71432.146-1.78444.13830.15590.0577-0.3239-0.17420.00860.27910.302-0.4503-0.21030.2749-0.0766-0.05610.40090.00140.40479.4095-25.406946.7529
80.2439-0.19030.5880.6584-0.32851.9464-0.06790.06510.0593-0.4272-0.02250.2332-0.3207-0.58820.00990.70250.1281-0.23480.7103-0.03830.43250.4631-2.61283.7475
91.784-1.11413.54661.2337-1.86727.16130.32650.827-0.1493-0.5798-0.34370.02720.52111.13750.06290.56250.0633-0.03270.721-0.06630.420331.4284-21.413810.9646
102.46310.67420.2232.4215-0.14682.43170.08170.0487-0.12930.0989-0.0571-0.3110.22950.39140.00090.25270.0739-0.06790.3643-0.04030.381347.0098-27.246551.6423
114.953-0.45064.81841.2221-1.56115.7504-0.16761.03090.3613-0.6632-0.3784-0.15590.33730.97880.22380.4820.1335-0.02020.69360.00270.445935.972-21.702119.0403
120.70040.0040.39551.3786-0.99115.8876-0.03150.47570.0426-0.626-0.0879-0.0677-0.12610.24910.11320.61330.0097-0.0530.6916-0.01430.356920.4913-7.5929-3.6966
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1chain 'A' and (resid 2 through 99 )A2 - 99
2X-RAY DIFFRACTION2chain 'A' and (resid 100 through 254 )A100 - 254
3X-RAY DIFFRACTION3chain 'A' and (resid 255 through 298 )A255 - 298
4X-RAY DIFFRACTION4chain 'A' and (resid 299 through 494 )A299 - 494
5X-RAY DIFFRACTION5chain 'B' and (resid 2 through 88 )B2 - 88
6X-RAY DIFFRACTION6chain 'B' and (resid 89 through 236 )B89 - 236
7X-RAY DIFFRACTION7chain 'B' and (resid 237 through 288 )B237 - 288
8X-RAY DIFFRACTION8chain 'B' and (resid 289 through 492 )B289 - 492
9X-RAY DIFFRACTION9chain 'C' and (resid 2 through 80 )C2 - 80
10X-RAY DIFFRACTION10chain 'C' and (resid 81 through 259 )C81 - 259
11X-RAY DIFFRACTION11chain 'C' and (resid 260 through 298 )C260 - 298
12X-RAY DIFFRACTION12chain 'C' and (resid 299 through 485 )C299 - 485

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Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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Yorodumi

Thousand views of thousand structures

  • Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
  • This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
  • The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

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