+Open data
-Basic information
Entry | Database: PDB / ID: 6kpp | ||||||
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Title | BNC105 in complex with tubulin | ||||||
Components |
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Keywords | ANTITUMOR PROTEIN / BNC105 / tubulin / protein-drug complex | ||||||
Function / homology | Function and homology information tubulin-tyrosine ligase activity / Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane / Hedgehog 'off' state / Cilium Assembly / Intraflagellar transport / COPI-dependent Golgi-to-ER retrograde traffic / Carboxyterminal post-translational modifications of tubulin / RHOH GTPase cycle / Sealing of the nuclear envelope (NE) by ESCRT-III / Kinesins ...tubulin-tyrosine ligase activity / Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane / Hedgehog 'off' state / Cilium Assembly / Intraflagellar transport / COPI-dependent Golgi-to-ER retrograde traffic / Carboxyterminal post-translational modifications of tubulin / RHOH GTPase cycle / Sealing of the nuclear envelope (NE) by ESCRT-III / Kinesins / PKR-mediated signaling / The role of GTSE1 in G2/M progression after G2 checkpoint / Aggrephagy / Resolution of Sister Chromatid Cohesion / Mitotic Prometaphase / EML4 and NUDC in mitotic spindle formation / Separation of Sister Chromatids / RHO GTPases activate IQGAPs / RHO GTPases Activate Formins / HSP90 chaperone cycle for steroid hormone receptors (SHR) in the presence of ligand / MHC class II antigen presentation / Recruitment of NuMA to mitotic centrosomes / microtubule depolymerization / COPI-mediated anterograde transport / regulation of microtubule polymerization or depolymerization / tubulin binding / spindle microtubule / protein modification process / structural constituent of cytoskeleton / microtubule cytoskeleton organization / microtubule cytoskeleton / neuron projection development / mitotic cell cycle / growth cone / Hydrolases; Acting on acid anhydrides; Acting on GTP to facilitate cellular and subcellular movement / microtubule / neuron projection / GTPase activity / nucleotide binding / GTP binding / Golgi apparatus / metal ion binding / cytoplasm Similarity search - Function | ||||||
Biological species | Mus musculus (house mouse) Gallus gallus (chicken) Sus scrofa (pig) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.74524106157 Å | ||||||
Authors | Wang, T. / Wu, C. / Pu, D. | ||||||
Citation | Journal: Biochem.Biophys.Res.Commun. / Year: 2020 Title: Unraveling the molecular mechanism of BNC105, a phase II clinical trial vascular disrupting agent, provides insights into drug design. Authors: Wang, T. / Wu, C. / Wang, C. / Zhang, G. / Arnst, K.E. / Yao, Y. / Zhang, Z. / Wang, Y. / Pu, D. / Li, W. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6kpp.cif.gz | 1 MB | Display | PDBx/mmCIF format |
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PDB format | pdb6kpp.ent.gz | 738.6 KB | Display | PDB format |
PDBx/mmJSON format | 6kpp.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6kpp_validation.pdf.gz | 2.3 MB | Display | wwPDB validaton report |
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Full document | 6kpp_full_validation.pdf.gz | 2.4 MB | Display | |
Data in XML | 6kpp_validation.xml.gz | 77.3 KB | Display | |
Data in CIF | 6kpp_validation.cif.gz | 103.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/kp/6kpp ftp://data.pdbj.org/pub/pdb/validation_reports/kp/6kpp | HTTPS FTP |
-Related structure data
Related structure data | 4i55S S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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