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- PDB-6ehx: scFv AbVance: increasing our knowledge of antibody structural spa... -
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Open data
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Basic information
Entry | Database: PDB / ID: 6ehx | |||||||||
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Title | scFv AbVance: increasing our knowledge of antibody structural space to enable faster and better decision making in drug discovery | |||||||||
![]() | scFv AbVance: increasing our knowledge of antibody structural space to enable faster and better decision making in drug discovery | |||||||||
![]() | IMMUNE SYSTEM / scFv / AbVance / Pistoia Alliance | |||||||||
Function / homology | Immunoglobulins / Immunoglobulin-like / Sandwich / Mainly Beta![]() | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() ![]() | |||||||||
![]() | Hargreaves, D. | |||||||||
![]() | ![]() Title: scFv AbVance: increasing our knowledge of antibody structural space to enable faster and better decision making in drug discovery Authors: Hargreaves, D. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 60.4 KB | Display | ![]() |
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PDB format | ![]() | 46.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 280.6 KB | Display | ![]() |
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Full document | ![]() | 281.8 KB | Display | |
Data in XML | ![]() | 13.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Antibody | Mass: 25534.531 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Production host: ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.79 Å3/Da / Density % sol: 67.55 % |
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Crystal grow | Temperature: 290 K / Method: vapor diffusion / pH: 7.5 / Details: NaCl 1.5M, Na Hepes, pH 7.5 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 S 6M / Detector: PIXEL / Date: Apr 23, 2012 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.976 Å / Relative weight: 1 |
Reflection | Resolution: 2.2→116 Å / Num. obs: 20644 / % possible obs: 100 % / Redundancy: 25.7 % / Biso Wilson estimate: 40.76 Å2 / Net I/σ(I): 35.9 |
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Processing
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Refinement | Resolution: 2.2→51.68 Å / Cor.coef. Fo:Fc: 0.935 / Cor.coef. Fo:Fc free: 0.926 / Rfactor Rfree error: 0 / SU R Cruickshank DPI: 0.183 / Cross valid method: THROUGHOUT / σ(F): 0 / SU R Blow DPI: 0.21 / SU Rfree Blow DPI: 0.178 / SU Rfree Cruickshank DPI: 0.166
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Displacement parameters | Biso mean: 36.81 Å2
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Refine analyze | Luzzati coordinate error obs: 0.3 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: 1 / Resolution: 2.2→51.68 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.2→2.32 Å / Rfactor Rfree error: 0 / Total num. of bins used: 10
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