登録情報 | データベース: PDB / ID: 5zbu |
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タイトル | Crystal Structure of PA-TM-RING E3 ligase RNF13 RING domain in complex with E2~Ub |
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要素 | - E3 ubiquitin-protein ligase RNF13
- Ubiquitin
- Ubiquitin-conjugating enzyme E2 D2
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キーワード | ENDOCYTOSIS / Ubiquitin E3 ligase / PA-TM-RING E3 ligase / RNF13 / E3:E2~Ub complex |
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機能・相同性 | 機能・相同性情報
organelle localization / (E3-independent) E2 ubiquitin-conjugating enzyme / JUN kinase binding / nuclear inner membrane / symbiont entry into host cell via disruption of host cell glycocalyx / E2 ubiquitin-conjugating enzyme / symbiont entry into host cell via disruption of host cell envelope / virus tail / ubiquitin conjugating enzyme activity / protein K48-linked ubiquitination ...organelle localization / (E3-independent) E2 ubiquitin-conjugating enzyme / JUN kinase binding / nuclear inner membrane / symbiont entry into host cell via disruption of host cell glycocalyx / E2 ubiquitin-conjugating enzyme / symbiont entry into host cell via disruption of host cell envelope / virus tail / ubiquitin conjugating enzyme activity / protein K48-linked ubiquitination / protein autoubiquitination / Synthesis of active ubiquitin: roles of E1 and E2 enzymes / TICAM1, RIP1-mediated IKK complex recruitment / IKK complex recruitment mediated by RIP1 / PINK1-PRKN Mediated Mitophagy / Negative regulators of DDX58/IFIH1 signaling / Peroxisomal protein import / Regulation of TNFR1 signaling / Inactivation of CSF3 (G-CSF) signaling / positive regulation of JNK cascade / Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha / CLEC7A (Dectin-1) signaling / FCERI mediated NF-kB activation / RING-type E3 ubiquitin transferase / protein modification process / protein polyubiquitination / ubiquitin-protein transferase activity / Downstream TCR signaling / Antigen processing: Ubiquitination & Proteasome degradation / ubiquitin protein ligase activity / late endosome membrane / E3 ubiquitin ligases ubiquitinate target proteins / Neddylation / ubiquitin-dependent protein catabolic process / protein ubiquitination / endosome / lysosomal membrane / intracellular membrane-bounded organelle / endoplasmic reticulum membrane / endoplasmic reticulum / protein-containing complex / extracellular exosome / zinc ion binding / nucleoplasm / ATP binding / nucleus / cytosol / cytoplasm類似検索 - 分子機能 ZNRF4 /RNF13/RNF167, PA domain / : / Ring finger domain / PA domain superfamily / PA domain / PA domain / Pectate lyase superfamily protein / Rhamnogalacturonase A/epimerase, pectate lyase-like / Ubiquitin-conjugating enzyme, active site / Ubiquitin-conjugating (UBC) active site signature. ...ZNRF4 /RNF13/RNF167, PA domain / : / Ring finger domain / PA domain superfamily / PA domain / PA domain / Pectate lyase superfamily protein / Rhamnogalacturonase A/epimerase, pectate lyase-like / Ubiquitin-conjugating enzyme, active site / Ubiquitin-conjugating (UBC) active site signature. / Ubiquitin-conjugating enzyme E2 / Ubiquitin-conjugating enzyme / Ubiquitin-conjugating (UBC) core domain profile. / Ubiquitin-conjugating enzyme E2, catalytic domain homologues / Ubiquitin-conjugating enzyme/RWD-like / Pectin lyase fold / Pectin lyase fold/virulence factor / Ring finger / Zinc finger RING-type profile. / Zinc finger, RING-type / Ubiquitin family / Zinc finger, RING/FYVE/PHD-type類似検索 - ドメイン・相同性 E3 ubiquitin-protein ligase RNF13 / Tail fiber / Ubiquitin-conjugating enzyme E2 D2類似検索 - 構成要素 |
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生物種 | Homo sapiens (ヒト) |
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手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 3.2 Å |
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データ登録者 | Datta, A.B. / Sarkar, S. |
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資金援助 | インド, 1件 組織 | 認可番号 | 国 |
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Wellcome Trust-DBT India Alliance | 500241/Z/11/Z | インド |
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引用 | ジャーナル: To Be Published タイトル: Crystal Structure of PA-TM-RING E3 ligase RNF13 RING domain in complex with E2~Ub 著者: Sarkar, S. / Datta, A.B. |
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履歴 | 登録 | 2018年2月12日 | 登録サイト: PDBJ / 処理サイト: PDBJ |
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改定 1.0 | 2019年2月27日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2023年11月22日 | Group: Data collection / Database references / Refinement description カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession |
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