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Yorodumi- PDB-5us6: Structure of Dihydrodipicolinate Reductase from Vibrio vulnificus... -
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Open data
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Basic information
| Entry | Database: PDB / ID: 5us6 | ||||||
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| Title | Structure of Dihydrodipicolinate Reductase from Vibrio vulnificus Bound to NADH and 2,6 Pyridine Dicarboxylic Acid with Intact Polyhistidine Tag | ||||||
Components | 4-hydroxy-tetrahydrodipicolinate reductase | ||||||
Keywords | OXIDOREDUCTASE / Lysine Biosynthesis | ||||||
| Function / homology | Function and homology information4-hydroxy-tetrahydrodipicolinate reductase / oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor / 4-hydroxy-tetrahydrodipicolinate reductase / diaminopimelate biosynthetic process / lysine biosynthetic process via diaminopimelate / NAD binding / NADP binding / cytosol Similarity search - Function | ||||||
| Biological species | Vibrio vulnificus (bacteria) | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / Resolution: 2.61 Å | ||||||
Authors | Mank, N.M. / Arnette, A.K. / Chruszcz, M. | ||||||
Citation | Journal: Biochim Biophys Acta Gen Subj / Year: 2021Title: Comparative structural and mechanistic studies of 4-hydroxy-tetrahydrodipicolinate reductases from Mycobacterium tuberculosis and Vibrio vulnificus. Authors: Pote, S. / Kachhap, S. / Mank, N.J. / Daneshian, L. / Klapper, V. / Pye, S. / Arnette, A.K. / Shimizu, L.S. / Borowski, T. / Chruszcz, M. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 5us6.cif.gz | 1.1 MB | Display | PDBx/mmCIF format |
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| PDB format | pdb5us6.ent.gz | 982.4 KB | Display | PDB format |
| PDBx/mmJSON format | 5us6.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 5us6_validation.pdf.gz | 3 MB | Display | wwPDB validaton report |
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| Full document | 5us6_full_validation.pdf.gz | 3.1 MB | Display | |
| Data in XML | 5us6_validation.xml.gz | 114 KB | Display | |
| Data in CIF | 5us6_validation.cif.gz | 147.7 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/us/5us6 ftp://data.pdbj.org/pub/pdb/validation_reports/us/5us6 | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 5tejC ![]() 5tekC ![]() 5temC ![]() 5tenC ![]() 5tjyC ![]() 5tjzC ![]() 5ugvC C: citing same article ( |
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| Similar structure data |
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Assembly
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| Noncrystallographic symmetry (NCS) | NCS domain:
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Vibrio vulnificus (bacteria)
X-RAY DIFFRACTION
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