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Open data
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Basic information
| Entry | Database: PDB / ID: 5tzt | |||||||||
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| Title | Crystal structure of human CD47 ECD bound to Fab of C47B161 | |||||||||
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Keywords | IMMUNE SYSTEM / antigen-Fab complex / immunoglobulin | |||||||||
| Function / homology | Function and homology informationcellular response to interleukin-12 / regulation of Fc receptor mediated stimulatory signaling pathway / protein binding involved in heterotypic cell-cell adhesion / positive regulation of monocyte extravasation / cell-cell adhesion mediator activity / positive regulation of cell-cell adhesion / regulation of interleukin-10 production / regulation of type II interferon production / ATP export / fibrinogen binding ...cellular response to interleukin-12 / regulation of Fc receptor mediated stimulatory signaling pathway / protein binding involved in heterotypic cell-cell adhesion / positive regulation of monocyte extravasation / cell-cell adhesion mediator activity / positive regulation of cell-cell adhesion / regulation of interleukin-10 production / regulation of type II interferon production / ATP export / fibrinogen binding / regulation of tumor necrosis factor production / regulation of interleukin-12 production / regulation of nitric oxide biosynthetic process / regulation of interleukin-6 production / Signal regulatory protein family interactions / negative regulation of phagocytosis / thrombospondin receptor activity / tertiary granule membrane / cellular response to interleukin-1 / Integrin cell surface interactions / specific granule membrane / positive regulation of stress fiber assembly / positive regulation of phagocytosis / integrin-mediated signaling pathway / Cell surface interactions at the vascular wall / positive regulation of T cell activation / cellular response to type II interferon / positive regulation of inflammatory response / cell migration / angiogenesis / inflammatory response / positive regulation of cell population proliferation / apoptotic process / Neutrophil degranulation / cell surface / extracellular exosome / plasma membrane Similarity search - Function | |||||||||
| Biological species | Homo sapiens (human) | |||||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / molecular replacement / Resolution: 2.89 Å | |||||||||
Authors | Cardoso, R.M.F. | |||||||||
Citation | Journal: Blood Cancer J / Year: 2017Title: Anti-leukemic activity and tolerability of anti-human CD47 monoclonal antibodies. Authors: Pietsch, E.C. / Dong, J. / Cardoso, R. / Zhang, X. / Chin, D. / Hawkins, R. / Dinh, T. / Zhou, M. / Strake, B. / Feng, P.H. / Rocca, M. / Santos, C.D. / Shan, X. / Danet-Desnoyers, G. / Shi, ...Authors: Pietsch, E.C. / Dong, J. / Cardoso, R. / Zhang, X. / Chin, D. / Hawkins, R. / Dinh, T. / Zhou, M. / Strake, B. / Feng, P.H. / Rocca, M. / Santos, C.D. / Shan, X. / Danet-Desnoyers, G. / Shi, F. / Kaiser, E. / Millar, H.J. / Fenton, S. / Swanson, R. / Nemeth, J.A. / Attar, R.M. | |||||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 5tzt.cif.gz | 428.9 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb5tzt.ent.gz | 350.3 KB | Display | PDB format |
| PDBx/mmJSON format | 5tzt.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 5tzt_validation.pdf.gz | 519.2 KB | Display | wwPDB validaton report |
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| Full document | 5tzt_full_validation.pdf.gz | 543 KB | Display | |
| Data in XML | 5tzt_validation.xml.gz | 43.8 KB | Display | |
| Data in CIF | 5tzt_validation.cif.gz | 58.9 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/tz/5tzt ftp://data.pdbj.org/pub/pdb/validation_reports/tz/5tzt | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 5tz2C ![]() 5tzuC ![]() 2jjsS C: citing same article ( S: Starting model for refinement |
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| Similar structure data |
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Assembly
| Deposited unit | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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Homo sapiens (human)
X-RAY DIFFRACTION
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