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Yorodumi- PDB-5nbn: Crystal structure of the Arp4-N-actin-Arp8-Ino80HSA module of INO80 -
+Open data
-Basic information
Entry | Database: PDB / ID: 5nbn | ||||||||||||
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Title | Crystal structure of the Arp4-N-actin-Arp8-Ino80HSA module of INO80 | ||||||||||||
Components |
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Keywords | HYDROLASE / Chromatin remodeling / Nanobody / INO80 / SWR1 / NuA4 | ||||||||||||
Function / homology | Function and homology information RHOB GTPase cycle / RHOA GTPase cycle / cellular bud neck contractile ring / ascospore wall assembly / vacuole inheritance / actin cortical patch / mitotic actomyosin contractile ring contraction / Swr1 complex / regulation of TOR signaling / telomere maintenance via recombination ...RHOB GTPase cycle / RHOA GTPase cycle / cellular bud neck contractile ring / ascospore wall assembly / vacuole inheritance / actin cortical patch / mitotic actomyosin contractile ring contraction / Swr1 complex / regulation of TOR signaling / telomere maintenance via recombination / kinetochore assembly / Ino80 complex / regulation of metabolic process / mitotic recombination / ATP-dependent chromatin remodeler activity / SWI/SNF complex / DNA duplex unwinding / establishment of cell polarity / NuA4 histone acetyltransferase complex / actin filament bundle / protein secretion / subtelomeric heterochromatin formation / actin filament / Hydrolases; Acting on acid anhydrides; Acting on acid anhydrides to facilitate cellular and subcellular movement / structural constituent of cytoskeleton / endocytosis / double-strand break repair / chromatin organization / histone binding / transcription by RNA polymerase II / chromosome, telomeric region / cytoskeleton / hydrolase activity / chromatin remodeling / DNA repair / DNA-templated transcription / mRNA binding / DNA damage response / chromatin binding / regulation of DNA-templated transcription / chromatin / regulation of transcription by RNA polymerase II / ATP hydrolysis activity / positive regulation of transcription by RNA polymerase II / DNA binding / ATP binding / identical protein binding / nucleus / cytoplasm Similarity search - Function | ||||||||||||
Biological species | Saccharomyces cerevisiae (brewer's yeast) | ||||||||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / molecular replacement / Resolution: 4 Å | ||||||||||||
Authors | Knoll, K.R. / Eustermann, S. / Hopfner, K.P. | ||||||||||||
Funding support | 3items
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Citation | Journal: Nat. Struct. Mol. Biol. / Year: 2018 Title: The nuclear actin-containing Arp8 module is a linker DNA sensor driving INO80 chromatin remodeling. Authors: Knoll, K.R. / Eustermann, S. / Niebauer, V. / Oberbeckmann, E. / Stoehr, G. / Schall, K. / Tosi, A. / Schwarz, M. / Buchfellner, A. / Korber, P. / Hopfner, K.P. | ||||||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 5nbn.cif.gz | 597.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb5nbn.ent.gz | 480.9 KB | Display | PDB format |
PDBx/mmJSON format | 5nbn.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 5nbn_validation.pdf.gz | 1.9 MB | Display | wwPDB validaton report |
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Full document | 5nbn_full_validation.pdf.gz | 1.9 MB | Display | |
Data in XML | 5nbn_validation.xml.gz | 99.4 KB | Display | |
Data in CIF | 5nbn_validation.cif.gz | 131.5 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/nb/5nbn ftp://data.pdbj.org/pub/pdb/validation_reports/nb/5nbn | HTTPS FTP |
-Related structure data
Related structure data | 5nblC 5nbmC 4am6S C: citing same article (ref.) S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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