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Yorodumi- PDB-5nbm: Crystal structure of the Arp4-N-actin(ATP-state) heterodimer boun... -
+Open data
-Basic information
Entry | Database: PDB / ID: 5nbm | ||||||||||||
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Title | Crystal structure of the Arp4-N-actin(ATP-state) heterodimer bound by a nanobody | ||||||||||||
Components |
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Keywords | HYDROLASE / Chromatin remodeling / Nanobody / INO80 / SWR1 / NuA4 | ||||||||||||
Function / homology | Function and homology information RHOB GTPase cycle / RHOA GTPase cycle / cellular bud neck contractile ring / ascospore wall assembly / mitotic actomyosin contractile ring contraction / vacuole inheritance / actin cortical patch / Swr1 complex / kinetochore assembly / Ino80 complex ...RHOB GTPase cycle / RHOA GTPase cycle / cellular bud neck contractile ring / ascospore wall assembly / mitotic actomyosin contractile ring contraction / vacuole inheritance / actin cortical patch / Swr1 complex / kinetochore assembly / Ino80 complex / SWI/SNF complex / establishment of cell polarity / NuA4 histone acetyltransferase complex / actin filament bundle / protein secretion / actin filament / Hydrolases; Acting on acid anhydrides; Acting on acid anhydrides to facilitate cellular and subcellular movement / structural constituent of cytoskeleton / endocytosis / chromatin organization / histone binding / chromatin remodeling / DNA repair / chromatin binding / DNA-templated transcription / regulation of transcription by RNA polymerase II / chromatin / regulation of DNA-templated transcription / ATP hydrolysis activity / ATP binding / identical protein binding / nucleus Similarity search - Function | ||||||||||||
Biological species | Saccharomyces cerevisiae (brewer's yeast) Vicugna pacos (alpaca) Trichoplusia ni (cabbage looper) | ||||||||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / molecular replacement / Resolution: 3.4 Å | ||||||||||||
Authors | Knoll, K.R. / Eustermann, S. / Hopfner, K.P. | ||||||||||||
Funding support | 3items
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Citation | Journal: Nat. Struct. Mol. Biol. / Year: 2018 Title: The nuclear actin-containing Arp8 module is a linker DNA sensor driving INO80 chromatin remodeling. Authors: Knoll, K.R. / Eustermann, S. / Niebauer, V. / Oberbeckmann, E. / Stoehr, G. / Schall, K. / Tosi, A. / Schwarz, M. / Buchfellner, A. / Korber, P. / Hopfner, K.P. | ||||||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 5nbm.cif.gz | 723.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb5nbm.ent.gz | 615.4 KB | Display | PDB format |
PDBx/mmJSON format | 5nbm.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 5nbm_validation.pdf.gz | 1.5 MB | Display | wwPDB validaton report |
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Full document | 5nbm_full_validation.pdf.gz | 1.6 MB | Display | |
Data in XML | 5nbm_validation.xml.gz | 64.6 KB | Display | |
Data in CIF | 5nbm_validation.cif.gz | 85.5 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/nb/5nbm ftp://data.pdbj.org/pub/pdb/validation_reports/nb/5nbm | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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