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- PDB-2plg: Crystal structure of T110839 protein from Synechococcus elongatus -
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Open data
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Basic information
Entry | Database: PDB / ID: 2plg | ||||||
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Title | Crystal structure of T110839 protein from Synechococcus elongatus | ||||||
![]() | Tll0839 protein | ||||||
![]() | STRUCTURAL GENOMICS / UNKNOWN FUNCTION / Hypothetical / uncharacterized / DUF1821 / 10450c / NYSGXRC / PSI-2 / Protein Structure Initiative / New York SGX Research Center for Structural Genomics | ||||||
Function / homology | Putative sensory transduction regulator YbjN / Putative bacterial sensory transduction regulator / Yope Regulator; Chain: A, - #10 / Yope Regulator; Chain: A, / 2-Layer Sandwich / Alpha Beta / Tll0839 protein![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Madegowda, M. / Eswaramoorthy, S. / Burley, S.K. / Swaminathan, S. / New York SGX Research Center for Structural Genomics (NYSGXRC) | ||||||
![]() | ![]() Title: Crystal structure of T110839 protein from Synechococcus elongatus. Authors: Madegowda, M. / Eswaramoorthy, S. / Burley, S.K. / Swaminathan, S. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 67.1 KB | Display | ![]() |
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PDB format | ![]() | 53.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 436.1 KB | Display | ![]() |
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Full document | ![]() | 440 KB | Display | |
Data in XML | ![]() | 14.2 KB | Display | |
Data in CIF | ![]() | 19 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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3 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 18055.834 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 4.83 Å3/Da / Density % sol: 74.51 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, sitting drop / pH: 5.6 Details: 1.0 M Lithium sulfate, 0.5 M Ammonium sulfate, 0.1 M Tri-Na citrate, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 298K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 210 / Detector: CCD / Date: Apr 10, 2007 / Details: mirror |
Radiation | Monochromator: Si(111) / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.98 Å / Relative weight: 1 |
Reflection | Resolution: 2.46→50 Å / Num. all: 26434 / Num. obs: 26434 / % possible obs: 99.9 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 27.6 % / Biso Wilson estimate: 41.2 Å2 / Rmerge(I) obs: 0.1 / Net I/σ(I): 10 |
Reflection shell | Resolution: 2.46→2.55 Å / Redundancy: 18.7 % / Rmerge(I) obs: 0.63 / Num. unique all: 2558 / % possible all: 99.1 |
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Processing
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Refinement | Method to determine structure: ![]() Details: Residues listed as missing in Remark 465 are due to lack of electron density. Residues with missing atoms listed in Remark 470 are due to lack of electron density for side chains and modeled ...Details: Residues listed as missing in Remark 465 are due to lack of electron density. Residues with missing atoms listed in Remark 470 are due to lack of electron density for side chains and modeled as alanines. Data beyond 2.6 A were not used in the refinement since the quality of the data was poor.
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 36.3367 Å2 / ksol: 0.385523 e/Å3 | ||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 33.8 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 2.6→37.54 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.6→2.76 Å / Rfactor Rfree error: 0.022 / Total num. of bins used: 6
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Xplor file |
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