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- PDB-5jjo: The crystal structure of immunity protein PA5088 from Pseudomonas... -
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Open data
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Basic information
Entry | Database: PDB / ID: 5jjo | ||||||
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Title | The crystal structure of immunity protein PA5088 from Pseudomonas aeruginosa | ||||||
![]() | Uncharacterized protein | ||||||
![]() | IMMUNE SYSTEM / immunity protein | ||||||
Function / homology | Sel1 repeat / Sel1-like repeat / Sel1-like repeats. / : / Tetratricopeptide-like helical domain superfamily / protein ubiquitination / : / Uncharacterized protein![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Li, Z.Q. / Gao, Z.Q. / She, Z. / Dong, Y.H. | ||||||
![]() | ![]() Title: Structural analysis of Pseudomonas aeruginosa H3-T6SS immunity proteins Authors: Yang, X.Y. / Li, Z.Q. / She, Z. / Geng, Z. / Xu, J.H. / Gao, Z.Q. / Dong, Y.H. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 65 KB | Display | ![]() |
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PDB format | ![]() | 50.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 422.3 KB | Display | ![]() |
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Full document | ![]() | 422.8 KB | Display | |
Data in XML | ![]() | 13 KB | Display | |
Data in CIF | ![]() | 18.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 30596.486 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() | ||
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#2: Chemical | ChemComp-AU / #3: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.56 Å3/Da / Density % sol: 51.99 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, sitting drop / pH: 9.5 / Details: 30% (w/v) PEG3000, 0.1M CHES |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 6M / Detector: PIXEL / Date: Oct 25, 2015 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2→50 Å / Num. obs: 22344 / % possible obs: 100 % / Redundancy: 22.7 % / CC1/2: 0.98 / Rmerge(I) obs: 0.096 / Net I/σ(I): 52.76 |
Reflection shell | Resolution: 2→2.03 Å / Redundancy: 24.1 % / Rmerge(I) obs: 0.586 / Mean I/σ(I) obs: 6.33 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.002→25.902 Å
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Refine LS restraints |
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LS refinement shell |
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