- PDB-5hj5: Crystal structure of tertiary complex of glucosamine-6-phosphate ... -
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基本情報
登録情報
データベース: PDB / ID: 5hj5
タイトル
Crystal structure of tertiary complex of glucosamine-6-phosphate deaminase from Vibrio cholerae with BETA-D-GLUCOSE-6-PHOSPHATE and FRUCTOSE-6-PHOSPHATE
要素
Glucosamine-6-phosphate deaminase
キーワード
HYDROLASE / Structural Genomics / Center for Structural Genomics of Infectious Diseases / CSGID / glucosamine-6-phosphate deaminase / Vibrio cholerae
機能・相同性
機能・相同性情報
glucosamine catabolic process / glucosamine-6-phosphate deaminase / glucosamine-6-phosphate deaminase activity / N-acetylglucosamine catabolic process / N-acetylneuraminate catabolic process / carbohydrate metabolic process / identical protein binding / cytoplasm 類似検索 - 分子機能
解像度: 1.7→39.023 Å / SU ML: 0.16 / 交差検証法: FREE R-VALUE / σ(F): 1.34 / 位相誤差: 15.87 / 立体化学のターゲット値: ML 詳細: According to the authors the breaks in peptide linkage between residues 262, 263 and 263, 264 are due to the fact that the coordinates of residues from 259 for molecules C and D are ...詳細: According to the authors the breaks in peptide linkage between residues 262, 263 and 263, 264 are due to the fact that the coordinates of residues from 259 for molecules C and D are representing only partial structures among more than 20 multiple conformations.
Rfactor
反射数
%反射
Rfree
0.1697
17059
5.03 %
Rwork
0.1354
322113
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obs
0.1371
170600
99.83 %
溶媒の処理
減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL