- PDB-5gl8: The crystal structure of Nattokinase fragments -
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Basic information
Entry
Database: PDB / ID: 5gl8
Title
The crystal structure of Nattokinase fragments
Components
Subtilisin NAT
Keywords
HYDROLASE / frinolytic enzymes
Function / homology
Function and homology information
subtilisin / sporulation resulting in formation of a cellular spore / serine-type endopeptidase activity / proteolysis / extracellular space / metal ion binding Similarity search - Function
Resolution: 1.8→50 Å / Cor.coef. Fo:Fc: 0.912 / Cor.coef. Fo:Fc free: 0.865 / SU B: 4.292 / SU ML: 0.134 / Cross valid method: THROUGHOUT / ESU R: 0.181 / ESU R Free: 0.173 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.29053
2344
4.9 %
RANDOM
Rwork
0.23067
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obs
0.23363
45026
99.62 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK