Software Name Version Classification PHENIX1.9_1692refinement HKL-2000data reduction HKL-2000data scaling PHASERphasing
Refinement Resolution : 1.997→30.038 Å / SU ML : 0.23 / Cross valid method : FREE R-VALUE / σ(F) : 1.97 / Phase error : 23.65 / Stereochemistry target values : MLRfactor Num. reflection % reflection Rfree 0.228 3604 5.02 % Rwork 0.1795 - - obs 0.1819 71844 94.7 %
Solvent computation Shrinkage radii : 0.9 Å / VDW probe radii : 1.11 Å / Solvent model : FLAT BULK SOLVENT MODELRefinement step Cycle : LAST / Resolution : 1.997→30.038 ÅProtein Nucleic acid Ligand Solvent Total Num. atoms 8443 0 0 796 9239
Refine LS restraints Refine-ID Type Dev ideal Number X-RAY DIFFRACTION f_bond_d0.008 8653 X-RAY DIFFRACTION f_angle_d1.165 11752 X-RAY DIFFRACTION f_dihedral_angle_d13.046 3121 X-RAY DIFFRACTION f_chiral_restr0.049 1310 X-RAY DIFFRACTION f_plane_restr0.005 1517
LS refinement shell Show large table (7 x 26) Hide large table Resolution (Å)Rfactor Rfree Num. reflection Rfree Rfactor Rwork Num. reflection Rwork Refine-ID % reflection obs (%)1.9975-2.0237 0.2675 114 0.2163 2341 X-RAY DIFFRACTION 84 2.0237-2.0515 0.2693 154 0.2213 2595 X-RAY DIFFRACTION 95 2.0515-2.0808 0.2818 125 0.2245 2604 X-RAY DIFFRACTION 91 2.0808-2.1118 0.3009 142 0.2224 2594 X-RAY DIFFRACTION 96 2.1118-2.1448 0.2637 161 0.2091 2642 X-RAY DIFFRACTION 96 2.1448-2.18 0.2466 143 0.1994 2704 X-RAY DIFFRACTION 96 2.18-2.2175 0.2532 125 0.1959 2612 X-RAY DIFFRACTION 96 2.2175-2.2578 0.295 133 0.2107 2587 X-RAY DIFFRACTION 91 2.2578-2.3013 0.2846 116 0.2025 2609 X-RAY DIFFRACTION 95 2.3013-2.3482 0.2604 143 0.1888 2691 X-RAY DIFFRACTION 96 2.3482-2.3992 0.2691 126 0.1997 2655 X-RAY DIFFRACTION 97 2.3992-2.455 0.2583 140 0.2002 2697 X-RAY DIFFRACTION 96 2.455-2.5164 0.2805 153 0.1965 2666 X-RAY DIFFRACTION 97 2.5164-2.5844 0.2721 139 0.1951 2702 X-RAY DIFFRACTION 96 2.5844-2.6604 0.2701 128 0.1943 2644 X-RAY DIFFRACTION 97 2.6604-2.7462 0.2478 142 0.1889 2624 X-RAY DIFFRACTION 95 2.7462-2.8443 0.2529 163 0.1834 2667 X-RAY DIFFRACTION 96 2.8443-2.9581 0.2418 141 0.1831 2588 X-RAY DIFFRACTION 95 2.9581-3.0926 0.2533 155 0.1784 2659 X-RAY DIFFRACTION 95 3.0926-3.2554 0.2072 138 0.1726 2644 X-RAY DIFFRACTION 96 3.2554-3.4591 0.2219 129 0.1671 2617 X-RAY DIFFRACTION 94 3.4591-3.7258 0.1941 150 0.1547 2537 X-RAY DIFFRACTION 92 3.7258-4.0999 0.1806 140 0.1512 2567 X-RAY DIFFRACTION 93 4.0999-4.6912 0.166 107 0.1381 2675 X-RAY DIFFRACTION 95 4.6912-5.903 0.1787 144 0.1637 2688 X-RAY DIFFRACTION 97 5.903-30.0415 0.2198 153 0.2039 2631 X-RAY DIFFRACTION 96
Refinement TLS params. Method : refined / Refine-ID : X-RAY DIFFRACTION
Show large table (25 x 44) Hide large table ID L11 (°2 )L12 (°2 )L13 (°2 )L22 (°2 )L23 (°2 )L33 (°2 )S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2 )T12 (Å2 )T13 (Å2 )T22 (Å2 )T23 (Å2 )T33 (Å2 )Origin x (Å)Origin y (Å)Origin z (Å)1 3.265 -1.42 -0.3535 2.9436 0.7726 1.5132 0.0659 0.5674 0.1138 -0.4511 -0.0794 0.2048 -0.0814 -0.0719 0.048 0.2366 -0.0363 0.0029 0.2286 -0.0011 0.1726 0.5312 -11.8737 -16.9038 2 3.3817 0.2414 0.3637 2.3377 0.0155 -0.0296 0.0321 -0.1204 -0.1646 0.142 -0.0558 0.1232 0.2352 0.0181 -0.0245 0.2477 -0.0146 0.0096 0.1782 0.0037 0.1588 0.0886 -18.182 -10.945 3 2.0844 -1.8924 -1.483 1.7757 1.2652 1.839 -0.0495 -0.0099 0.0126 -0.0556 0.069 0.0154 -0.0317 0.0554 -0.0059 0.1531 -0.0368 -0.0015 0.1139 0.0007 0.1642 -4.7842 1.0409 -4.1245 4 2.3932 0.5091 -0.4958 4.1911 -0.3053 2.177 0.0175 0.1938 -0.0938 0.1829 -0.0123 -0.2831 -0.1953 0.0406 -0.0143 0.123 -0.0084 -0.0116 0.1911 0.0074 0.1436 -12.2696 12.8212 0.862 5 2.6084 1.6423 1.5767 5.1349 5.8946 7.5398 -0.1952 0.1391 0.3411 -0.5942 -0.1556 0.8386 -0.4001 -0.2503 0.3015 0.2343 0.0004 -0.0444 0.2931 0.0349 0.2124 -20.3639 16.0976 -3.1867 6 2.3866 -2.5688 0.345 2.7458 -0.3688 2.8256 -0.1779 -0.1941 0.1535 0.5271 0.3029 0.2854 0.0169 0.0329 -0.0641 0.1151 0.0003 -0.0144 0.1992 -0.0018 0.1032 16.8072 0.6364 3.5696 7 3.0291 -0.6672 -0.7325 5.7959 -1.1425 2.8834 -0.0686 0.1668 -0.3879 0.2132 -0.0996 -0.6526 0.5105 0.3863 0.1103 0.2166 0.0651 0.0122 0.2193 0.0178 0.2831 23.3255 -12.0018 -1.1864 8 3.2943 0.8063 -0.5339 4.274 0.2318 2.4475 -0.0418 0.1816 0.0459 -0.2476 -0.0546 -0.1278 -0.0559 0.1095 0.062 0.1344 -0.0214 -0.0015 0.1581 -0.0133 0.1275 19.1246 -2.2906 -7.8564 9 2.6095 0.6686 -0.6945 5.4251 1.082 1.5756 0.0303 0.2824 0.2126 -0.3315 -0.0406 0.1687 -0.1326 0.0599 0.0052 0.1638 -0.002 -0.0146 0.2046 0.0333 0.1595 15.3518 3.4527 -4.4916 10 0.564 -1.0968 -1.0728 6.1546 3.1332 2.2756 -0.0213 -0.0693 0.0279 0.016 0.1367 -0.3126 0.091 0.0784 -0.1409 0.1666 0.0214 -0.0602 0.165 0.0045 0.2084 11.7253 0.0306 2.2443 11 7.8154 6.1024 2.1798 7.6126 1.5802 4.6891 -0.1462 -0.02 0.3814 -0.2249 0.0849 0.5756 0.136 -0.6768 0.0963 0.2157 0.0173 0.0095 0.2658 0.0161 0.2047 -20.0903 13.4158 12.6346 12 3.9521 2.3975 -3.7981 1.8715 -2.0591 3.5679 -0.0863 -0.2535 -0.0815 -0.0302 -0.0154 -0.0207 0.0894 0.1462 0.0705 0.1891 0.0048 -0.0163 0.1795 -0.032 0.1548 -5.0956 11.0058 14.6951 13 5.0039 1.1306 -2.8139 1.466 0.4325 3.1901 -0.2902 0.3064 -0.2425 -0.1668 0.2057 -0.0739 0.4009 -0.1238 0.115 0.154 0.0592 -0.0635 0.147 0.004 0.1517 -3.6427 9.573 10.9511 14 7.6438 1.6734 -1.5067 3.3893 0.2413 3.7494 -0.0765 -0.3052 -0.1961 0.1362 -0.1455 0.2147 0.1756 -0.3152 0.2656 0.2154 0.001 -0.0055 0.1903 0.0511 0.1397 -16.4554 8.367 20.1315 15 3.8324 2.3232 -3.7216 2.3033 -1.4199 4.2098 0.1238 -0.0615 0.7168 -0.09 -0.0511 0.1669 -0.1802 0.0094 -0.1096 0.2037 -0.0066 -0.0354 0.1171 -0.0197 0.1452 -7.7559 16.963 21.8145 16 2.571 -2.5345 -2.2129 4.841 2.036 4.1999 -0.0765 -0.3007 -0.393 0.1844 0.0833 -0.2353 0.2064 0.0207 -0.0955 0.1825 0.0277 -0.0138 0.1508 0.0506 0.1921 -9.6914 -5.7308 51.6006 17 3.3807 -0.5238 -0.9085 2.8766 0.6172 1.4439 -0.0278 -0.2521 0.0207 0.1839 0.0682 -0.0914 0.0921 0.0112 -0.0957 0.1602 -0.0165 -0.0018 0.1714 -0.0056 0.1424 -14.8889 4.4541 51.7844 18 6.2264 -0.4063 -1.4227 4.9543 0.8171 6.2561 -0.09 0.1755 -0.2201 -0.1299 -0.2972 0.5619 0.0058 -0.5044 0.1331 0.1638 -0.0211 -0.0167 0.2288 0.0311 0.2331 -24.8059 4.0828 48.7416 19 5.4568 2.2105 4.1872 4.3632 3.0553 3.7899 0.0357 -0.3293 -0.318 0.2381 -0.1045 0.1794 0.0808 -0.3279 0.0392 0.18 0.0043 0.0155 0.2085 0.0485 0.1972 -20.4618 -2.4905 54.3943 20 2.0195 -1.6505 -1.0976 1.8518 1.1386 1.6721 0.026 0.0455 -0.0373 0.0524 -0.0657 -0.0438 0.0036 -0.1057 0.055 0.1664 -0.0546 0.0024 0.1358 0.0174 0.1468 -4.679 -2.3792 42.6261 21 5.0014 1.0462 -1.1003 1.9575 1.1358 1.0816 0.1776 -0.0239 -0.2407 0.2706 -0.1103 -0.0416 -0.0461 0.0065 -0.0699 0.2425 0.0325 -0.0085 0.1508 0.0476 0.2398 11.3075 -12.3611 37.539 22 3.0384 1.0586 -0.0181 3.1852 0.5807 2.7009 -0.1482 0.5212 0.5346 0.0088 0.1617 -0.1125 -0.0097 0.3828 0.0151 0.1865 0.0031 -0.0114 0.1579 0.0285 0.1929 13.9751 -8.6904 33.8683 23 7.5977 2.6139 -4.3834 4.5804 -1.1627 6.1812 0.0095 -0.5234 -0.6638 0.4019 -0.2409 -0.4249 0.2676 0.2608 0.2467 0.2578 0.0115 -0.0758 0.2091 0.0214 0.2114 15.8578 -17.3429 40.5923 24 5.91 -2.3345 1.1555 1.1403 0.1024 1.792 0.0444 0.3345 -0.1678 -0.1137 -0.0171 -0.1401 0.0272 0.0429 -0.0295 0.2116 0.0323 0.0149 0.1332 0.037 0.1181 -2.6644 18.2093 33.5915 25 8.3788 0.8282 2.6219 3.8057 1.1495 3.3781 -0.0704 0.1319 -0.0552 0.0764 -0.0498 0.3872 -0.1123 -0.4816 0.1452 0.1679 0.0204 -0.004 0.0901 0.0573 0.1714 -15.8045 23.1138 38.4068 26 0.8796 -0.5673 -0.578 0.9913 0.4753 0.7095 0.0421 0.0144 0.0396 0.0408 -0.0039 0.0083 0.0152 -0.0496 -0.0424 0.1744 -0.0013 -0.0275 0.1738 0.0165 0.1699 -0.9981 12.1599 38.9462 27 1.1265 1.155 1.1942 3.3835 3.3714 3.445 0.011 -0.0287 0.0708 -0.0666 -0.1747 0.261 -0.0256 -0.099 0.1406 0.1413 -0.0304 0.0359 0.1725 0.0059 0.158 9.935 -2.4887 22.4063 28 1.0939 0.7118 -0.5408 6.0501 3.8415 4.541 0.1603 -0.1102 -0.0472 0.3654 -0.2191 0.1063 0.2003 -0.2704 0.061 0.1372 0.0361 -0.0151 0.1536 0.0398 0.17 8.3829 -1.1922 26.0221 29 2.4412 0.1011 -1.1254 7.5669 2.4131 3.7828 -0.0558 0.1737 -0.1215 -0.0908 -0.2959 0.3114 0.355 -0.1774 0.3097 0.2142 -0.0079 -0.0623 0.2162 0.0047 0.1536 8.5043 -14.0278 16.9459 30 1.4117 1.6589 0.5277 2.9037 2.2934 2.509 0.1108 -0.0026 -0.1013 -0.0308 -0.0927 -0.8089 -0.0837 0.1125 -0.0002 0.1412 0.005 0.0095 0.2413 0.0099 0.1681 16.1324 -4.5534 15.2365 31 6.2169 0.2784 0.8225 5.8616 0.2733 8.1995 0.047 0.4412 0.4252 0.7598 -0.0261 -0.1925 -0.866 0.2577 -0.0696 0.5177 0.0212 0.0222 0.2138 0.0731 0.4577 -28.6777 32.2056 64.8318 32 4.207 -0.4072 -0.5334 3.6539 0.87 5.6643 0.1251 0.4526 -0.1972 0.2229 -0.0146 0.7738 -0.7168 -0.7401 -0.2138 0.3593 0.1365 0.1055 0.3601 0.0121 0.5661 -39.3279 26.2983 61.8588 33 5.2295 0.4294 -1.2252 6.6879 -0.5567 5.1577 0.2934 -0.133 0.4746 -0.1185 -0.0659 0.0849 -0.9021 0.1245 -0.2579 0.3057 0.0654 0.0402 0.286 -0.059 0.3087 -24.9594 26.1023 58.8393 34 5.1027 4.8665 -2.4258 5.9787 -4.7593 5.6184 0.1455 -1.3432 -0.5249 1.3949 -0.3126 -0.6285 0.2157 0.6088 0.1668 0.8841 0.21 0.0199 0.5603 0.2472 0.7332 -27.139 13.0515 71.3459 35 3.4964 1.2683 -1.4994 5.793 0.543 1.4993 0.2182 0.1715 -0.0085 -0.5399 -0.0224 0.7127 0.0217 -0.4906 -0.0819 0.3337 0.0449 -0.0173 0.3306 0.0163 0.3006 -30.2902 18.5198 53.6005 36 2.5817 -1.352 0.1317 1.3364 -0.1031 3.4776 0.2986 0.2646 0.1759 0.2047 0.0167 0.4075 -0.2562 -0.5091 -0.2943 0.2737 0.0598 0.0846 0.3095 -0.0127 0.4474 -35.4443 23.8871 59.5767 37 3.5185 0.3426 0.5845 3.7212 1.6001 5.1303 0.3212 -1.1555 -0.4025 0.7483 -0.4305 -0.1993 0.0664 0.2555 -0.0712 0.5542 0.0962 0.0204 0.2439 0.074 0.3653 -28.9162 23.9125 65.6943 38 3.9992 -0.3891 -0.8757 6.1324 1.4973 5.8942 0.2846 -0.1664 -0.6701 0.0238 -0.3272 -0.8737 0.4051 0.7659 0.0157 0.365 0.1464 0.047 0.4499 0.0247 0.4038 31.2376 -28.3662 -24.4845 39 5.0951 -0.8235 -3.4111 9.0471 -0.9741 7.9026 0.0809 0.7443 -0.8591 -0.593 0.4499 0.1287 0.044 -0.1974 -0.4904 0.1973 0.0272 0.0195 0.2408 -0.0255 0.2876 23.9095 -23.565 -23.7774 40 4.9128 -0.8185 3.9776 5.3865 -1.3798 8.351 0.323 0.4436 -0.2107 -0.6536 -0.3074 0.2145 0.3966 -0.5571 0.1095 0.2581 0.0695 0.0293 0.4363 -0.053 0.212 18.0965 -24.2332 -26.3691 41 6.6948 1.171 0.5389 2.2936 0.6616 0.6408 0.1339 -0.7744 -1.2118 0.5286 -0.0561 -0.3933 0.2751 -0.1581 -0.0582 0.4125 0.0167 -0.024 0.4182 0.0929 0.4207 20.0115 -27.9135 -14.7603 42 4.1539 0.3298 0.9118 6.8138 0.8244 6.3014 -0.1381 0.4946 -1.0019 0.1688 0.1573 0.1795 0.9146 0.1213 0.193 0.484 0.12 0.0346 0.3282 -0.0213 0.4451 26.4498 -33.9775 -21.1393 43 2.0512 -2.4871 -1.7092 5.2879 1.9657 3.455 0.3726 0.1775 0.6628 -0.4768 -0.3859 -0.0493 -0.3497 -0.0867 -0.1319 0.4456 0.1358 0.0482 0.4812 -0.0256 0.3405 25.6606 -17.7367 -24.384 44 5.0303 0.7106 -0.5082 7.4252 -1.07 4.9396 0.1035 1.1319 -0.2814 -1.1753 -0.07 0.3036 0.5028 -0.366 0.0505 0.3733 0.0331 0.0162 0.5133 -0.0596 0.2355 26.5176 -26.8574 -31.7602
Refinement TLS group Show large table (4 x 44) Hide large table ID Refine-ID Refine TLS-ID Selection details 1 X-RAY DIFFRACTION 1 chain 'A' and (resid 2 through 39 )2 X-RAY DIFFRACTION 2 chain 'A' and (resid 40 through 91 )3 X-RAY DIFFRACTION 3 chain 'A' and (resid 92 through 152 )4 X-RAY DIFFRACTION 4 chain 'A' and (resid 153 through 197 )5 X-RAY DIFFRACTION 5 chain 'A' and (resid 198 through 220 )6 X-RAY DIFFRACTION 6 chain 'B' and (resid 1 through 18 )7 X-RAY DIFFRACTION 7 chain 'B' and (resid 19 through 36 )8 X-RAY DIFFRACTION 8 chain 'B' and (resid 37 through 79 )9 X-RAY DIFFRACTION 9 chain 'B' and (resid 80 through 94 )10 X-RAY DIFFRACTION 10 chain 'B' and (resid 95 through 117 )11 X-RAY DIFFRACTION 11 chain 'B' and (resid 118 through 132 )12 X-RAY DIFFRACTION 12 chain 'B' and (resid 133 through 154 )13 X-RAY DIFFRACTION 13 chain 'B' and (resid 155 through 178 )14 X-RAY DIFFRACTION 14 chain 'B' and (resid 179 through 201 )15 X-RAY DIFFRACTION 15 chain 'B' and (resid 202 through 217 )16 X-RAY DIFFRACTION 16 chain 'C'