Entry Database : PDB / ID : 5dc0 Structure visualization Downloads & linksTitle CRYSTAL STRUCTURE OF MONOBODY GG3/ABL1 SH2 DOMAIN COMPLEX ComponentsFibronectin Tyrosine-protein kinase ABL1 DetailsKeywords PROTEIN BINDING / ENGINEERED BINDING PROTEIN / ANTIBODY MIMIC / PROTEIN-PROTEIN COMPLEX / SH2 DOMAIN / TYROSINE-PROTEIN KINASEFunction / homology Function and homology informationFunction Domain/homology Component
negative regulation of monocyte activation / positive regulation of actin filament binding / calcium-independent cell-matrix adhesion / phospholipase C-inhibiting G protein-coupled receptor signaling pathway / negative regulation of transforming growth factor beta production / positive regulation of oxidoreductase activity / Fibronectin matrix formation / protein localization to cytoplasmic microtubule plus-end / DN4 thymocyte differentiation / Extracellular matrix organization ... negative regulation of monocyte activation / positive regulation of actin filament binding / calcium-independent cell-matrix adhesion / phospholipase C-inhibiting G protein-coupled receptor signaling pathway / negative regulation of transforming growth factor beta production / positive regulation of oxidoreductase activity / Fibronectin matrix formation / protein localization to cytoplasmic microtubule plus-end / DN4 thymocyte differentiation / Extracellular matrix organization / response to epinephrine / positive regulation of substrate-dependent cell migration, cell attachment to substrate / podocyte apoptotic process / transitional one stage B cell differentiation / Role of ABL in ROBO-SLIT signaling / activation of protein kinase C activity / neural crest cell migration involved in autonomic nervous system development / nicotinate-nucleotide adenylyltransferase activity / regulation of modification of synaptic structure / positive regulation of microtubule binding / delta-catenin binding / DNA conformation change / peptidase activator activity / microspike assembly / fibrinogen complex / neuroepithelial cell differentiation / B cell proliferation involved in immune response / positive regulation of Wnt signaling pathway, planar cell polarity pathway / positive regulation of extracellular matrix organization / cerebellum morphogenesis / positive regulation of blood vessel branching / B-1 B cell homeostasis / peptide cross-linking / negative regulation of ubiquitin-protein transferase activity / neuropilin signaling pathway / neuropilin binding / mitochondrial depolarization / bubble DNA binding / negative regulation of protein serine/threonine kinase activity / integrin activation / ALK mutants bind TKIs / activated T cell proliferation / cellular response to dopamine / regulation of hematopoietic stem cell differentiation / cell-substrate junction assembly / regulation of cell motility / regulation of Cdc42 protein signal transduction / proline-rich region binding / mitogen-activated protein kinase binding / positive regulation of dendrite development / myoblast proliferation / syntaxin binding / biological process involved in interaction with symbiont / proteoglycan binding / Molecules associated with elastic fibres / alpha-beta T cell differentiation / extracellular matrix structural constituent / regulation of T cell differentiation / cardiac muscle cell proliferation / regulation of axon extension / MET activates PTK2 signaling / Fc-gamma receptor signaling pathway involved in phagocytosis / HDR through Single Strand Annealing (SSA) / Syndecan interactions / positive regulation of cell migration involved in sprouting angiogenesis / p130Cas linkage to MAPK signaling for integrins / negative regulation of cell-cell adhesion / Myogenesis / endodermal cell differentiation / positive regulation of osteoblast proliferation / regulation of microtubule polymerization / RUNX2 regulates osteoblast differentiation / platelet-derived growth factor receptor-beta signaling pathway / negative regulation of cellular senescence / positive regulation of focal adhesion assembly / associative learning / GRB2:SOS provides linkage to MAPK signaling for Integrins / endoplasmic reticulum-Golgi intermediate compartment / Bergmann glial cell differentiation / regulation of endocytosis / neuromuscular process controlling balance / negative regulation of mitotic cell cycle / Non-integrin membrane-ECM interactions / actin monomer binding / basement membrane / negative regulation of long-term synaptic potentiation / negative regulation of BMP signaling pathway / negative regulation of double-strand break repair via homologous recombination / endothelial cell migration / ECM proteoglycans / signal transduction in response to DNA damage / RHO GTPases Activate WASPs and WAVEs / positive regulation of T cell migration / Integrin cell surface interactions / mismatch repair / positive regulation of axon extension / regulation of cell adhesion / BMP signaling pathway / negative regulation of endothelial cell apoptotic process / canonical NF-kappaB signal transduction Similarity search - Function Fibronectin type I domain / : / Fibronectin, type I / Fibronectin type-I domain signature. / Fibronectin type-I domain profile. / Fibronectin type 1 domain / F-actin binding / F-actin binding / F-actin binding domain (FABD) / Tyrosine-protein kinase ABL, SH2 domain ... Fibronectin type I domain / : / Fibronectin, type I / Fibronectin type-I domain signature. / Fibronectin type-I domain profile. / Fibronectin type 1 domain / F-actin binding / F-actin binding / F-actin binding domain (FABD) / Tyrosine-protein kinase ABL, SH2 domain / Fibronectin type II domain / Fibronectin type II domain superfamily / Fibronectin type II domain / Fibronectin type-II collagen-binding domain signature. / Fibronectin type-II collagen-binding domain profile. / Fibronectin type 2 domain / SH2 domain / SHC Adaptor Protein / : / Kringle-like fold / EGF-like domain signature 1. / Fibronectin type III domain / SH3 domain / Fibronectin type 3 domain / SH2 domain / Fibronectin type-III domain profile. / Fibronectin type III / Fibronectin type III superfamily / Src homology 2 (SH2) domain profile. / Src homology 2 domains / SH2 domain / Src homology 3 domains / SH2 domain superfamily / SH3-like domain superfamily / Src homology 3 (SH3) domain profile. / SH3 domain / Tyrosine-protein kinase, catalytic domain / Tyrosine kinase, catalytic domain / Tyrosine protein kinases specific active-site signature. / Tyrosine-protein kinase, active site / Serine-threonine/tyrosine-protein kinase, catalytic domain / Protein tyrosine and serine/threonine kinase / Immunoglobulins / Protein kinase, ATP binding site / Protein kinases ATP-binding region signature. / Immunoglobulin-like fold / Protein kinase domain profile. / Protein kinase domain / Protein kinase-like domain superfamily / Immunoglobulin-like / Sandwich / 2-Layer Sandwich / Mainly Beta / Alpha Beta Similarity search - Domain/homologyBiological species Homo sapiens (human)Method X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution : 2.23 Å DetailsAuthors Wojcik, J.B. / Grabe, G. / Koide, S. Funding support United States, Switzerland, 4items Details Hide detailsOrganization Grant number Country National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R01-GM090324 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) T32GM07281 United States National Institutes of Health/National Cancer Institute (NIH/NCI) P30CA014599 United States Swiss Cancer League S-3132-02-2013; KLS-3595-02-2015 Switzerland
CitationJournal : J.Biol.Chem. / Year : 2016Title : Allosteric Inhibition of Bcr-Abl Kinase by High Affinity Monobody Inhibitors Directed to the Src Homology 2 (SH2)-Kinase Interface.Authors : Wojcik, J. / Lamontanara, A.J. / Grabe, G. / Koide, A. / Akin, L. / Gerig, B. / Hantschel, O. / Koide, S. History Deposition Aug 22, 2015 Deposition site : RCSB / Processing site : RCSBRevision 1.0 Mar 2, 2016 Provider : repository / Type : Initial releaseRevision 1.1 Mar 9, 2016 Group : Database referencesRevision 1.2 May 11, 2016 Group : Database referencesRevision 1.3 Sep 20, 2017 Group : Author supporting evidence / Database references / Derived calculationsCategory : citation / pdbx_audit_support / pdbx_struct_oper_listItem : _citation.journal_id_CSD / _pdbx_audit_support.funding_organization / _pdbx_struct_oper_list.symmetry_operationRevision 1.4 Dec 4, 2019 Group : Author supporting evidence / Category : pdbx_audit_support / Item : _pdbx_audit_support.funding_organizationRevision 1.5 Mar 6, 2024 Group : Data collection / Database references / Category : chem_comp_atom / chem_comp_bond / database_2Item : _database_2.pdbx_DOI / _database_2.pdbx_database_accession
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