Entry Database : PDB / ID : 5dc9 Structure visualization Downloads & linksTitle CRYSTAL STRUCTURE OF MONOBODY AS25/ABL1 SH2 DOMAIN COMPLEX, CRYSTAL B ComponentsAS25 monobody Tyrosine-protein kinase ABL1 DetailsKeywords PROTEIN BINDING / ENGINEERED BINDING PROTEIN / ANTIBODY MIMIC / PROTEIN-PROTEIN COMPLEX / SH2 DOMAIN / TYROSINE-PROTEIN KINASEFunction / homology Function and homology informationFunction Domain/homology Component
negative regulation of monocyte activation / : / positive regulation of actin filament binding / calcium-independent cell-matrix adhesion / negative regulation of transforming growth factor beta production / positive regulation of oxidoreductase activity / protein localization to cytoplasmic microtubule plus-end / DNA conformation change / Fibronectin matrix formation / podocyte apoptotic process ... negative regulation of monocyte activation / : / positive regulation of actin filament binding / calcium-independent cell-matrix adhesion / negative regulation of transforming growth factor beta production / positive regulation of oxidoreductase activity / protein localization to cytoplasmic microtubule plus-end / DNA conformation change / Fibronectin matrix formation / podocyte apoptotic process / DN4 thymocyte differentiation / Role of ABL in ROBO-SLIT signaling / Extracellular matrix organization / response to epinephrine / transitional one stage B cell differentiation / positive regulation of substrate-dependent cell migration, cell attachment to substrate / activation of protein kinase C activity / nicotinate-nucleotide adenylyltransferase activity / neural crest cell migration involved in autonomic nervous system development / regulation of modification of synaptic structure / positive regulation of microtubule binding / delta-catenin binding / B cell proliferation involved in immune response / positive regulation of extracellular matrix organization / peptidase activator activity / neuroepithelial cell differentiation / microspike assembly / positive regulation of Wnt signaling pathway, planar cell polarity pathway / cerebellum morphogenesis / fibrinogen complex / positive regulation of blood vessel branching / B-1 B cell homeostasis / peptide cross-linking / mitochondrial depolarization / neuropilin signaling pathway / negative regulation of ubiquitin-protein transferase activity / neuropilin binding / bubble DNA binding / integrin activation / negative regulation of protein serine/threonine kinase activity / ALK mutants bind TKIs / activated T cell proliferation / cellular response to dopamine / cell-substrate junction assembly / regulation of cell motility / regulation of Cdc42 protein signal transduction / proline-rich region binding / positive regulation of dendrite development / mitogen-activated protein kinase binding / myoblast proliferation / syntaxin binding / biological process involved in interaction with symbiont / regulation of hematopoietic stem cell differentiation / proteoglycan binding / Molecules associated with elastic fibres / alpha-beta T cell differentiation / cardiac muscle cell proliferation / regulation of T cell differentiation / regulation of axon extension / extracellular matrix structural constituent / MET activates PTK2 signaling / HDR through Single Strand Annealing (SSA) / Syndecan interactions / positive regulation of cell migration involved in sprouting angiogenesis / negative regulation of cell-cell adhesion / Fc-gamma receptor signaling pathway involved in phagocytosis / p130Cas linkage to MAPK signaling for integrins / Myogenesis / endodermal cell differentiation / positive regulation of osteoblast proliferation / regulation of microtubule polymerization / RUNX2 regulates osteoblast differentiation / platelet-derived growth factor receptor-beta signaling pathway / negative regulation of cellular senescence / positive regulation of focal adhesion assembly / associative learning / Bergmann glial cell differentiation / GRB2:SOS provides linkage to MAPK signaling for Integrins / regulation of endocytosis / neuromuscular process controlling balance / endoplasmic reticulum-Golgi intermediate compartment / negative regulation of mitotic cell cycle / Non-integrin membrane-ECM interactions / actin monomer binding / negative regulation of BMP signaling pathway / negative regulation of long-term synaptic potentiation / basement membrane / ECM proteoglycans / endothelial cell migration / RHO GTPases Activate WASPs and WAVEs / positive regulation of T cell migration / signal transduction in response to DNA damage / Integrin cell surface interactions / positive regulation of axon extension / BMP signaling pathway / negative regulation of double-strand break repair via homologous recombination / regulation of cell adhesion / mismatch repair / negative regulation of endothelial cell apoptotic process / canonical NF-kappaB signal transduction Similarity search - Function : / Fibronectin type I domain / Fibronectin, type I / Fibronectin type-I domain signature. / Fibronectin type-I domain profile. / Fibronectin type 1 domain / F-actin binding / F-actin binding / F-actin binding domain (FABD) / Tyrosine-protein kinase ABL, SH2 domain ... : / Fibronectin type I domain / Fibronectin, type I / Fibronectin type-I domain signature. / Fibronectin type-I domain profile. / Fibronectin type 1 domain / F-actin binding / F-actin binding / F-actin binding domain (FABD) / Tyrosine-protein kinase ABL, SH2 domain / Fibronectin type II domain / Fibronectin type II domain superfamily / Fibronectin type II domain / Fibronectin type-II collagen-binding domain signature. / Fibronectin type-II collagen-binding domain profile. / Fibronectin type 2 domain / SH2 domain / SHC Adaptor Protein / : / Kringle-like fold / EGF-like domain signature 1. / Fibronectin type III domain / SH3 domain / Fibronectin type 3 domain / Fibronectin type-III domain profile. / Fibronectin type III / Fibronectin type III superfamily / SH2 domain / Src homology 2 (SH2) domain profile. / Src homology 2 domains / SH2 domain / Src homology 3 domains / SH2 domain superfamily / SH3-like domain superfamily / Src homology 3 (SH3) domain profile. / SH3 domain / Tyrosine-protein kinase, catalytic domain / Tyrosine kinase, catalytic domain / Tyrosine protein kinases specific active-site signature. / Tyrosine-protein kinase, active site / Protein tyrosine and serine/threonine kinase / Serine-threonine/tyrosine-protein kinase, catalytic domain / Immunoglobulins / Protein kinase, ATP binding site / Protein kinases ATP-binding region signature. / Immunoglobulin-like fold / Protein kinase domain profile. / Protein kinase domain / Protein kinase-like domain superfamily / Immunoglobulin-like / Sandwich / 2-Layer Sandwich / Mainly Beta / Alpha Beta Similarity search - Domain/homologyBiological species Homo sapiens (human)Method X-RAY DIFFRACTION / SYNCHROTRON / Resolution : 1.56 Å DetailsAuthors Wojcik, J.B. / Koide, A. / Koide, S. CitationJournal : J.Biol.Chem. / Year : 2016Title : Allosteric Inhibition of Bcr-Abl Kinase by High Affinity Monobody Inhibitors Directed to the Src Homology 2 (SH2)-Kinase Interface.Authors : Wojcik, J. / Lamontanara, A.J. / Grabe, G. / Koide, A. / Akin, L. / Gerig, B. / Hantschel, O. / Koide, S. History Deposition Aug 23, 2015 Deposition site : RCSB / Processing site : RCSBRevision 1.0 Mar 2, 2016 Provider : repository / Type : Initial releaseRevision 1.1 Mar 9, 2016 Group : Data collectionRevision 1.2 May 11, 2016 Group : Database referencesRevision 1.3 Mar 6, 2024 Group : Data collection / Database references / Derived calculationsCategory : chem_comp_atom / chem_comp_bond ... chem_comp_atom / chem_comp_bond / citation / database_2 / pdbx_struct_oper_list Item : _citation.journal_id_CSD / _database_2.pdbx_DOI ... _citation.journal_id_CSD / _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_oper_list.symmetry_operation
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