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- PDB-5ck3: Signal recognition particle receptor SRb-GTP/SRX complex from Cha... -
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Open data
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Basic information
Entry | Database: PDB / ID: 5ck3 | ||||||
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Title | Signal recognition particle receptor SRb-GTP/SRX complex from Chaetomium thermophilum | ||||||
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![]() | SIGNALING PROTEIN / GTPase / Longin domain / regulator complex / protein translocation | ||||||
Function / homology | ![]() signal recognition particle receptor complex / protein serine/threonine kinase activity => GO:0004674 / signal recognition particle binding / SRP-dependent cotranslational protein targeting to membrane / chromatin organization / non-specific serine/threonine protein kinase / DNA repair / protein serine kinase activity / GTPase activity / endoplasmic reticulum membrane ...signal recognition particle receptor complex / protein serine/threonine kinase activity => GO:0004674 / signal recognition particle binding / SRP-dependent cotranslational protein targeting to membrane / chromatin organization / non-specific serine/threonine protein kinase / DNA repair / protein serine kinase activity / GTPase activity / endoplasmic reticulum membrane / GTP binding / ATP binding / nucleus / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Jadhav, B.R. / Wild, K. / Sinning, I. | ||||||
![]() | ![]() Title: Structure and Switch Cycle of SR beta as Ancestral Eukaryotic GTPase Associated with Secretory Membranes. Authors: Jadhav, B. / Wild, K. / Pool, M.R. / Sinning, I. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 216.7 KB | Display | ![]() |
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PDB format | ![]() | 168.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.3 MB | Display | ![]() |
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Full document | ![]() | 1.4 MB | Display | |
Data in XML | ![]() | 49.8 KB | Display | |
Data in CIF | ![]() | 65 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 5ck4C ![]() 5ck5C ![]() 2fh5S S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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3 | ![]()
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Unit cell |
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Components
-Protein , 2 types, 6 molecules ACEBDF
#1: Protein | Mass: 20568.152 Da / Num. of mol.: 3 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Protein | Mass: 33251.621 Da / Num. of mol.: 3 / Fragment: residues 42-346 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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-Non-polymers , 4 types, 8 molecules ![](data/chem/img/MG.gif)
![](data/chem/img/GTP.gif)
![](data/chem/img/GOL.gif)
![](data/chem/img/SO4.gif)
![](data/chem/img/GTP.gif)
![](data/chem/img/GOL.gif)
![](data/chem/img/SO4.gif)
#3: Chemical | #4: Chemical | #5: Chemical | ChemComp-GOL / | #6: Chemical | ChemComp-SO4 / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.69 Å3/Da / Density % sol: 54.27 % |
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Crystal grow | Temperature: 291.15 K / Method: vapor diffusion, sitting drop / pH: 5.5 / Details: 20% (w/v) PEG3350 and 0.1 M sodium citrate |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARMOSAIC 225 mm CCD / Detector: CCD / Date: Feb 12, 2014 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.99 Å / Relative weight: 1 |
Reflection | Resolution: 3.2→45.5 Å / Num. obs: 21109 / % possible obs: 99.9 % / Redundancy: 1.9 % / Rmerge(I) obs: 0.14 / Net I/σ(I): 7.2 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 2fh5 Resolution: 3.2→45.467 Å / SU ML: 0.5 / Cross valid method: FREE R-VALUE / σ(F): 1.34 / Phase error: 33.26 / Stereochemistry target values: ML
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 3.2→45.467 Å
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Refine LS restraints |
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LS refinement shell |
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