[English] 日本語
Yorodumi- PDB-4u62: Trichodysplasia spinulosa-associated polyomavirus (TSPyV) VP1 in ... -
+
Open data
-
Basic information
| Entry | Database: PDB / ID: 4u62 | ||||||
|---|---|---|---|---|---|---|---|
| Title | Trichodysplasia spinulosa-associated polyomavirus (TSPyV) VP1 in complex with 3'-sialyllactose | ||||||
Components | Structural protein VP1 | ||||||
Keywords | VIRAL PROTEIN / viral coat protein / jelly-roll fold / glycan binding | ||||||
| Function / homology | Function and homology informationT=7 icosahedral viral capsid / endocytosis involved in viral entry into host cell / virion attachment to host cell / host cell nucleus / structural molecule activity / metal ion binding Similarity search - Function | ||||||
| Biological species | Trichodysplasia spinulosa-associated polyomavirus | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.55 Å | ||||||
Authors | Stroh, L.J. / Stehle, T. | ||||||
Citation | Journal: Plos Pathog. / Year: 2015Title: Trichodysplasia spinulosa-Associated Polyomavirus Uses a Displaced Binding Site on VP1 to Engage Sialylated Glycolipids. Authors: Stroh, L.J. / Gee, G.V. / Blaum, B.S. / Dugan, A.S. / Feltkamp, M.C. / Atwood, W.J. / Stehle, T. | ||||||
| History |
|
-
Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
|---|
-
Downloads & links
-
Download
| PDBx/mmCIF format | 4u62.cif.gz | 1 MB | Display | PDBx/mmCIF format |
|---|---|---|---|---|
| PDB format | pdb4u62.ent.gz | 893.5 KB | Display | PDB format |
| PDBx/mmJSON format | 4u62.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 4u62_validation.pdf.gz | 1.6 MB | Display | wwPDB validaton report |
|---|---|---|---|---|
| Full document | 4u62_full_validation.pdf.gz | 1.6 MB | Display | |
| Data in XML | 4u62_validation.xml.gz | 115.4 KB | Display | |
| Data in CIF | 4u62_validation.cif.gz | 168.2 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/u6/4u62 ftp://data.pdbj.org/pub/pdb/validation_reports/u6/4u62 | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 4u5zSC ![]() 4u60C ![]() 4u61C S: Starting model for refinement C: citing same article ( |
|---|---|
| Similar structure data |
-
Links
-
Assembly
| Deposited unit | ![]()
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ![]()
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 2 | ![]()
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Unit cell |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1 / Refine code: 5
|
Movie
Controller
Components
About Yorodumi



Trichodysplasia spinulosa-associated polyomavirus
X-RAY DIFFRACTION
Citation












PDBj





