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Yorodumi- PDB-4pos: Structure of Human Polyomavirus 9 VP1 pentamer in complex with 3'... -
+Open data
-Basic information
Entry | Database: PDB / ID: 4pos | |||||||||
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Title | Structure of Human Polyomavirus 9 VP1 pentamer in complex with 3'-sialyllactosamine | |||||||||
Components | VP1 | |||||||||
Keywords | VIRAL PROTEIN / jelly roll fold / capsid formation / receptor interaction / carbohydrate / sialyloligosaccharide / viral coat protein | |||||||||
Function / homology | Function and homology information T=7 icosahedral viral capsid / host cell nucleus / virion attachment to host cell / structural molecule activity / metal ion binding Similarity search - Function | |||||||||
Biological species | Human polyomavirus 9 | |||||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2 Å | |||||||||
Authors | Khan, Z.M. / Stehle, T. | |||||||||
Citation | Journal: J.Virol. / Year: 2014 Title: Crystallographic and glycan microarray analysis of human polyomavirus 9 VP1 identifies N-glycolyl neuraminic acid as a receptor candidate. Authors: Khan, Z.M. / Liu, Y. / Neu, U. / Gilbert, M. / Ehlers, B. / Feizi, T. / Stehle, T. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 4pos.cif.gz | 1 MB | Display | PDBx/mmCIF format |
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PDB format | pdb4pos.ent.gz | 893.3 KB | Display | PDB format |
PDBx/mmJSON format | 4pos.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 4pos_validation.pdf.gz | 3 MB | Display | wwPDB validaton report |
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Full document | 4pos_full_validation.pdf.gz | 3 MB | Display | |
Data in XML | 4pos_validation.xml.gz | 122.2 KB | Display | |
Data in CIF | 4pos_validation.cif.gz | 177.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/po/4pos ftp://data.pdbj.org/pub/pdb/validation_reports/po/4pos | HTTPS FTP |
-Related structure data
Related structure data | 4poqSC 4porC 4potC S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1 / Refine code: 5
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