VIRAL PROTEIN / viral coat protein / jelly-roll fold / glycan binding
Function / homology
Function and homology information
T=7 icosahedral viral capsid / host cell nucleus / virion attachment to host cell / structural molecule activity / metal ion binding Similarity search - Function
Capsid protein VP1,Polyomavirus / Polyomavirus Vp1; Chain A / Capsid protein VP1,Polyomavirus / Polyomavirus capsid protein VP1 superfamily / Polyomavirus coat protein / Double-stranded DNA virus, group I, capsid / Sandwich / Mainly Beta Similarity search - Domain/homology
#221 - May 2018 Human Papillomavirus and Vaccines similarity (1)
#200 - Aug 2016 Quasisymmetry in Icosahedral Viruses similarity (5)
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Assembly
Deposited unit
A: Structural protein VP1 B: Structural protein VP1 C: Structural protein VP1 D: Structural protein VP1 E: Structural protein VP1 F: Structural protein VP1 G: Structural protein VP1 H: Structural protein VP1 I: Structural protein VP1 J: Structural protein VP1
Resolution: 2.1→29.57 Å / Cor.coef. Fo:Fc: 0.946 / Cor.coef. Fo:Fc free: 0.921 / SU B: 8.523 / SU ML: 0.116 / Cross valid method: THROUGHOUT / ESU R: 0.052 / ESU R Free: 0.042 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.24916
7970
5 %
RANDOM
Rwork
0.20458
-
-
-
obs
0.20682
150901
98.31 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK