[English] 日本語
![](img/lk-miru.gif)
- PDB-4cn8: Structure of proximal thread matrix protein 1 (PTMP1) from the mu... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 4cn8 | ||||||
---|---|---|---|---|---|---|---|
Title | Structure of proximal thread matrix protein 1 (PTMP1) from the mussel byssus | ||||||
![]() | PROXIMAL THREAD MATRIX PROTEIN 1 | ||||||
![]() | STRUCTURAL PROTEIN | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Gertz, M. / Suhre, M.H. / Scheibel, T. / Steegborn, C. | ||||||
![]() | ![]() Title: Structural and Functional Features of a Collagen-Binding Matrix Protein from the Mussel Byssus. Authors: Suhre, M.H. / Gertz, M. / Steegborn, C. / Scheibel, T. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 153.4 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 121.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
---|
-Related structure data
Related structure data | ![]() 4cn9C ![]() 4cnbC ![]() 1aoxS ![]() 1qc5S C: citing same article ( S: Starting model for refinement |
---|---|
Similar structure data |
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
|
-
Components
#1: Protein | Mass: 49011.363 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Production host: ![]() ![]() | ||||
---|---|---|---|---|---|
#2: Chemical | #3: Chemical | #4: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 2.19 Å3/Da / Density % sol: 43.72 % / Description: NONE |
---|---|
Crystal grow | pH: 4.6 Details: 30% PEG2000-MME, 0.2 M AMMONIUM SULFATE, 0.1 M SODIUM ACETATE PH 4.6 |
-Data collection
Diffraction | Mean temperature: 100 K |
---|---|
Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARMOSAIC 225 mm CCD / Detector: CCD / Date: Jul 25, 2012 / Details: COLLIMATOR |
Radiation | Monochromator: SI(111) MONOCHROMATOR / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.918 Å / Relative weight: 1 |
Reflection | Resolution: 2.45→56 Å / Num. obs: 15438 / % possible obs: 97 % / Observed criterion σ(I): -3 / Redundancy: 4.1 % / Biso Wilson estimate: 35.71 Å2 / Rmerge(I) obs: 0.1 / Net I/σ(I): 13.3 |
Reflection shell | Resolution: 2.45→2.5 Å / Redundancy: 3.6 % / Rmerge(I) obs: 0.77 / Mean I/σ(I) obs: 1.7 / % possible all: 74.6 |
-
Processing
Software |
| |||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method to determine structure: ![]() Starting model: PDB ENTRIES 1AOX, 1QC5 Resolution: 2.45→30.832 Å / SU ML: 0.32 / σ(F): 1.99 / Phase error: 26.83 / Stereochemistry target values: ML
| |||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 41.2 Å2 | |||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.45→30.832 Å
| |||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
| |||||||||||||||||||||||||||||||||||||||||||||||||
LS refinement shell |
|