+Open data
-Basic information
Entry | Database: PDB / ID: 1aox | ||||||
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Title | I DOMAIN FROM INTEGRIN ALPHA2-BETA1 | ||||||
Components | INTEGRIN ALPHA 2 BETA | ||||||
Keywords | INTEGRIN / CELL ADHESION / GLYCOPROTEIN | ||||||
Function / homology | Function and homology information collagen receptor activity / substrate-dependent cell migration / positive regulation of transmission of nerve impulse / positive regulation of cell projection organization / collagen binding involved in cell-matrix adhesion / integrin alpha2-beta1 complex / response to parathyroid hormone / hypotonic response / response to L-ascorbic acid / skin morphogenesis ...collagen receptor activity / substrate-dependent cell migration / positive regulation of transmission of nerve impulse / positive regulation of cell projection organization / collagen binding involved in cell-matrix adhesion / integrin alpha2-beta1 complex / response to parathyroid hormone / hypotonic response / response to L-ascorbic acid / skin morphogenesis / CHL1 interactions / Laminin interactions / basal part of cell / positive regulation of phagocytosis, engulfment / positive regulation of smooth muscle contraction / collagen-activated signaling pathway / Platelet Adhesion to exposed collagen / mammary gland development / heparan sulfate proteoglycan binding / hepatocyte differentiation / mesodermal cell differentiation / focal adhesion assembly / response to muscle activity / integrin complex / positive regulation of positive chemotaxis / positive regulation of leukocyte migration / cell adhesion mediated by integrin / MET activates PTK2 signaling / Syndecan interactions / positive regulation of epithelial cell migration / cell-substrate adhesion / positive regulation of smooth muscle cell migration / response to amine / positive regulation of cell adhesion / ECM proteoglycans / positive regulation of collagen biosynthetic process / laminin binding / Integrin cell surface interactions / detection of mechanical stimulus involved in sensory perception of pain / axon terminus / collagen binding / cell-matrix adhesion / positive regulation of translation / cellular response to estradiol stimulus / female pregnancy / integrin-mediated signaling pathway / animal organ morphogenesis / positive regulation of smooth muscle cell proliferation / cell-cell adhesion / cellular response to mechanical stimulus / blood coagulation / integrin binding / virus receptor activity / amyloid-beta binding / response to hypoxia / cell adhesion / response to xenobiotic stimulus / external side of plasma membrane / focal adhesion / protein-containing complex binding / perinuclear region of cytoplasm / cell surface / metal ion binding / plasma membrane Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | X-RAY DIFFRACTION / MOLECULAR REPLACEMENT / Resolution: 2.1 Å | ||||||
Authors | Emsley, J. / King, S.L. / Bergelson, J.M. / Liddington, R.C. | ||||||
Citation | Journal: J.Biol.Chem. / Year: 1997 Title: Crystal structure of the I domain from integrin alpha2beta1. Authors: Emsley, J. / King, S.L. / Bergelson, J.M. / Liddington, R.C. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1aox.cif.gz | 91.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1aox.ent.gz | 70.9 KB | Display | PDB format |
PDBx/mmJSON format | 1aox.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ao/1aox ftp://data.pdbj.org/pub/pdb/validation_reports/ao/1aox | HTTPS FTP |
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-Related structure data
Related structure data | 1idoS S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (-0.6052, -0.7853, -0.1306), Vector: |
-Components
#1: Protein | Mass: 22240.111 Da / Num. of mol.: 2 / Fragment: I DOMAIN / Mutation: T137R, Q138S, P139S, T338G Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Plasmid: PGEX-KT / Species (production host): Escherichia coli / Production host: Escherichia coli BL21 (bacteria) / Strain (production host): BL21 / References: UniProt: P17301 #2: Chemical | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.4 Å3/Da / Density % sol: 52 % | ||||||||||||||||||||||||||||||||||||
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Crystal grow | pH: 7.5 / Details: pH 7.5 | ||||||||||||||||||||||||||||||||||||
Crystal | *PLUS | ||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Method: vapor diffusion, hanging drop / Details: Emsley, J., (1997) J. Biol. Chem., 272, 28512. | ||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 287 K |
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Diffraction source | Source: ROTATING ANODE / Type: RIGAKU / Wavelength: 1.5418 |
Detector | Type: RIGAKU / Detector: IMAGE PLATE / Date: Nov 1, 1996 / Details: MIRRORS |
Radiation | Monochromator: NI FILTER / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 2.1→50 Å / Num. obs: 23946 / % possible obs: 99.5 % / Observed criterion σ(I): 2 / Redundancy: 3.2 % / Rsym value: 0.103 / Net I/σ(I): 21.8 |
Reflection shell | Resolution: 2.1→2.23 Å / Redundancy: 3.2 % / Mean I/σ(I) obs: 9.7 / Rsym value: 0.259 / % possible all: 99.5 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: 1IDO Resolution: 2.1→15 Å / Data cutoff high absF: 10000000 / Data cutoff low absF: 0.001 / σ(F): 2
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Refinement step | Cycle: LAST / Resolution: 2.1→15 Å
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Refine LS restraints |
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Xplor file |
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Software | *PLUS Name: X-PLOR / Version: 3.8 / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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