- PDB-4c9i: Crystal Structure of the Strawberry Pathogenesis-Related 10 (PR-1... -
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Open data
ID or keywords:
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Basic information
Entry
Database: PDB / ID: 4c9i
Title
Crystal Structure of the Strawberry Pathogenesis-Related 10 (PR-10) Fra a 1E protein (Form B)
Components
MAJOR STRAWBERRY ALLERGEN FRA A 1-E
Keywords
ALLERGEN / PYR/PYL/RCAR / BET V 1 / FLAVONOIDS / CATECHIN
Function / homology
Function and homology information
flavonoid binding / flavonoid biosynthetic process / response to biotic stimulus / abscisic acid binding / abscisic acid-activated signaling pathway / protein phosphatase inhibitor activity / defense response / signaling receptor activity / nucleus / cytoplasm Similarity search - Function
Bet v I type allergen / Bet v I/Major latex protein / Pathogenesis-related protein Bet v 1 family / START domain / Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 / START-like domain superfamily / 2-Layer Sandwich / Alpha Beta Similarity search - Domain/homology
A: MAJOR STRAWBERRY ALLERGEN FRA A 1-E B: MAJOR STRAWBERRY ALLERGEN FRA A 1-E C: MAJOR STRAWBERRY ALLERGEN FRA A 1-E D: MAJOR STRAWBERRY ALLERGEN FRA A 1-E E: MAJOR STRAWBERRY ALLERGEN FRA A 1-E F: MAJOR STRAWBERRY ALLERGEN FRA A 1-E hetero molecules
Resolution: 3.1→29.87 Å / Cor.coef. Fo:Fc: 0.908 / Cor.coef. Fo:Fc free: 0.859 / SU B: 19.733 / SU ML: 0.347 / Cross valid method: THROUGHOUT / ESU R Free: 0.459 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.26295
1375
5.1 %
RANDOM
Rwork
0.21377
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obs
0.21628
25686
95.35 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK