- PDB-4bxw: Crystal Structure of the Prothrombinase Complex from the Venom of... -
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基本情報
登録情報
データベース: PDB / ID: 4bxw
タイトル
Crystal Structure of the Prothrombinase Complex from the Venom of Pseudonaja Textilis
要素
COAGULATION FACTOR V
FACTOR XA
キーワード
BLOOD CLOTTING / BLOOD COAGULATION / PROTHROMBINASE / FACTOR V / FACTOR X / HYDROLASE / PROTEASE
機能・相同性
機能・相同性情報
induction of blood coagulation in another organism / envenomation resulting in positive regulation of blood coagulation in another organism / peptidase activator activity / coagulation factor Xa / blood coagulation / toxin activity / copper ion binding / serine-type endopeptidase activity / calcium ion binding / protein-containing complex ...induction of blood coagulation in another organism / envenomation resulting in positive regulation of blood coagulation in another organism / peptidase activator activity / coagulation factor Xa / blood coagulation / toxin activity / copper ion binding / serine-type endopeptidase activity / calcium ion binding / protein-containing complex / proteolysis / extracellular region 類似検索 - 分子機能
解像度: 2.71→73.2 Å / Cor.coef. Fo:Fc: 0.938 / Cor.coef. Fo:Fc free: 0.823 / SU B: 11.594 / SU ML: 0.133 / 交差検証法: THROUGHOUT / ESU R: 0.076 / ESU R Free: 0.059 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. AUTO LOCAL NCS USED IN REFMAC
Rfactor
反射数
%反射
Selection details
Rfree
0.23308
1351
5.2 %
RANDOM
Rwork
0.15537
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obs
0.15917
24649
99.84 %
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溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: MASK