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- PDB-3u8j: Crystal structure of the acetylcholine binding protein (AChBP) fr... -

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基本情報

登録情報
データベース: PDB / ID: 3u8j
タイトルCrystal structure of the acetylcholine binding protein (AChBP) from Lymnaea stagnalis in complex with NS3531 (1-(pyridin-3-yl)-1,4-diazepane)
要素Acetylcholine-binding protein
キーワードAcetylcholine-binding protein/agonist / Lymnaea stagnalis / agonist / Ligand-bindig domain / Acetylcholine / Acetylcholine-binding protein / Acetylcholine-binding protein-agonist complex
機能・相同性
機能・相同性情報


excitatory extracellular ligand-gated monoatomic ion channel activity / synaptic cleft / transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential / transmembrane signaling receptor activity / postsynapse / neuron projection / membrane
類似検索 - 分子機能
Acetylcholine Binding Protein; Chain: A, / Neurotransmitter-gated ion-channel ligand-binding domain / Neurotransmitter-gated ion-channel / Neurotransmitter-gated ion-channel ligand-binding domain / Neurotransmitter-gated ion-channel ligand-binding domain superfamily / Neurotransmitter-gated ion-channel ligand binding domain / Distorted Sandwich / Ig-like domain profile. / Immunoglobulin-like domain / Mainly Beta
類似検索 - ドメイン・相同性
1-(pyridin-3-yl)-1,4-diazepane / Acetylcholine-binding protein
類似検索 - 構成要素
生物種Lymnaea stagnalis (無脊椎動物)
手法X線回折 / シンクロトロン / 分子置換 / 解像度: 2.35 Å
データ登録者Rohde, L.A.H. / Ahring, P.K. / Jensen, M.L. / Nielsen, E.O. / Peters, D. / Helgstrand, C. / Krintel, C. / Harpsoe, K. / Gajhede, M. / Kastrup, J.S. / Balle, T.
引用ジャーナル: J.Biol.Chem. / : 2012
タイトル: Intersubunit bridge formation governs agonist efficacy at nicotinic acetylcholine alpha 4 beta 2 receptors: unique role of halogen bonding revealed.
著者: Rohde, L.A. / Ahring, P.K. / Jensen, M.L. / Nielsen, E. / Peters, D. / Helgstrand, C. / Krintel, C. / Harpse, K. / Gajhede, M. / Kastrup, J.S. / Balle, T.
履歴
登録2011年10月17日登録サイト: RCSB / 処理サイト: RCSB
改定 1.02011年12月14日Provider: repository / タイプ: Initial release
改定 1.12013年9月18日Group: Database references
改定 1.22020年7月29日Group: Data collection / Derived calculations / Structure summary
カテゴリ: chem_comp / entity ...chem_comp / entity / pdbx_chem_comp_identifier / pdbx_entity_nonpoly / struct_conn / struct_site / struct_site_gen
Item: _chem_comp.name / _chem_comp.type ..._chem_comp.name / _chem_comp.type / _entity.pdbx_description / _pdbx_entity_nonpoly.name / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.pdbx_role
解説: Carbohydrate remediation / Provider: repository / タイプ: Remediation
改定 1.32023年9月13日Group: Data collection / Database references ...Data collection / Database references / Refinement description / Structure summary
カテゴリ: chem_comp / chem_comp_atom ...chem_comp / chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model
Item: _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

ダウンロードとリンク

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集合体

登録構造単位
B: Acetylcholine-binding protein
A: Acetylcholine-binding protein
C: Acetylcholine-binding protein
D: Acetylcholine-binding protein
E: Acetylcholine-binding protein
F: Acetylcholine-binding protein
G: Acetylcholine-binding protein
J: Acetylcholine-binding protein
I: Acetylcholine-binding protein
H: Acetylcholine-binding protein
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)241,19527
ポリマ-238,62510
非ポリマー2,57017
9,458525
1
B: Acetylcholine-binding protein
A: Acetylcholine-binding protein
C: Acetylcholine-binding protein
D: Acetylcholine-binding protein
E: Acetylcholine-binding protein
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)120,58314
ポリマ-119,3135
非ポリマー1,2709
905
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area14810 Å2
ΔGint-107 kcal/mol
Surface area41670 Å2
手法PISA
2
F: Acetylcholine-binding protein
G: Acetylcholine-binding protein
J: Acetylcholine-binding protein
I: Acetylcholine-binding protein
H: Acetylcholine-binding protein
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)120,61213
ポリマ-119,3135
非ポリマー1,3008
905
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area14500 Å2
ΔGint-76 kcal/mol
Surface area40390 Å2
手法PISA
単位格子
Length a, b, c (Å)72.350, 114.430, 247.370
Angle α, β, γ (deg.)90.00, 90.00, 90.00
Int Tables number19
Space group name H-MP212121
非結晶学的対称性 (NCS)NCSドメイン:
IDEns-ID
11
21
31
41
51
61
71
81
91
101
12
22
32
42
52
62
72
82
92
102
13
23
33
43
53
63
73
83
93
103
14
24
34
44
54
64
74
84
94
15
25
35
45
55
65
75
85
95
105
16
26
36
46
56
66
76
86
96
106
17
27
37
47
57
67
77
87
97
18
28
38
48
58
68
78
88
98
108
19
29
39
49
59
69
79
89
99
110
210
310
410
510
610
710
810
910
1010
111
211
311
411
511
611
711
811
911
112
212
312
412
512
612
712
812
912
1012
113
213
313
413
513
613
713
813
913
114
214
314
414
514
614
714
814
914
1014

NCSドメイン領域:
Dom-IDComponent-IDEns-IDSelection details
111chain A and resid 1:12
211chain B and resid 1:12
311chain C and resid 1:12
411chain D and resid 1:12
511chain E and resid 1:12
611chain F and resid 1:12
711chain G and resid 1:12
811chain H and resid 1:12
911chain I and resid 1:12
1011chain J and resid 1:12
112chain A and resid 16:20
212chain B and resid 16:20
312chain C and resid 16:20
412chain D and resid 16:20
512chain E and resid 16:20
612chain F and resid 16:20
712chain G and resid 16:20
812chain H and resid 16:20
912chain I and resid 16:20
1012chain J and resid 16:20
113chain A and resid 26:42
213chain B and resid 26:42
313chain C and resid 26:42
413chain D and resid 26:42
513chain E and resid 26:42
613chain F and resid 26:42
713chain G and resid 26:42
813chain H and resid 26:42
913chain I and resid 26:42
1013chain J and resid 26:42
114chain A and resid 43
214chain B and resid 43
314chain C and resid 43
414chain D and resid 43
514chain E and resid 43
614chain F and resid 43
714chain G and resid 43
814chain H and resid 43
914chain I and resid 43
115chain A and resid 44:67
215chain B and resid 44:67
315chain C and resid 44:67
415chain D and resid 44:67
515chain E and resid 44:67
615chain F and resid 44:67
715chain G and resid 44:67
815chain H and resid 44:67
915chain I and resid 44:67
1015chain J and resid 44:67
116chain A and resid 70:130
216chain B and resid 70:130
316chain C and resid 70:130
416chain D and resid 70:130
516chain E and resid 70:130
616chain F and resid 70:130
716chain G and resid 70:130
816chain H and resid 70:130
916chain I and resid 70:130
1016chain J and resid 70:130
117chain A and resid 131
217chain B and resid 131
317chain C and resid 131
417chain D and resid 131
517chain E and resid 131
617chain G and resid 131
717chain H and resid 131
817chain I and resid 131
917chain J and resid 131
118chain A and resid 132:152
218chain B and resid 132:152
318chain C and resid 132:152
418chain D and resid 132:152
518chain E and resid 132:152
618chain F and resid 132:152
718chain G and resid 132:152
818chain H and resid 132:152
918chain I and resid 132:152
1018chain J and resid 132:152
119chain A and resid 153:154
219chain B and resid 153:154
319chain D and resid 153:154
419chain E and resid 153:154
519chain F and resid 153:154
619chain G and resid 153:154
719chain H and resid 153:154
819chain I and resid 153:154
919chain J and resid 153:154
1110chain A and resid 164:169
2110chain B and resid 164:169
3110chain C and resid 164:169
4110chain D and resid 164:169
5110chain E and resid 164:169
6110chain F and resid 164:169
7110chain G and resid 164:169
8110chain H and resid 164:169
9110chain I and resid 164:169
10110chain J and resid 164:169
1111chain A and resid 170
2111chain B and resid 170
3111chain C and resid 170
4111chain D and resid 170
5111chain E and resid 170
6111chain F and resid 170
7111chain G and resid 170
8111chain H and resid 170
9111chain J and resid 170
1112chain A and resid 171:189
2112chain B and resid 171:189
3112chain C and resid 171:189
4112chain D and resid 171:189
5112chain E and resid 171:189
6112chain F and resid 171:189
7112chain G and resid 171:189
8112chain H and resid 171:189
9112chain I and resid 171:189
10112chain J and resid 171:189
1113chain A and resid 190
2113chain B and resid 190
3113chain C and resid 190
4113chain D and resid 190
5113chain E and resid 190
6113chain G and resid 190
7113chain H and resid 190
8113chain I and resid 190
9113chain J and resid 190
1114chain A and resid 191:204
2114chain B and resid 191:204
3114chain C and resid 191:204
4114chain D and resid 191:204
5114chain E and resid 191:204
6114chain F and resid 191:204
7114chain G and resid 191:204
8114chain H and resid 191:204
9114chain I and resid 191:204
10114chain J and resid 191:204

NCSアンサンブル:
ID
1
2
3
4
5
6
7
8
9
10
11
12
13
14

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要素

#1: タンパク質
Acetylcholine-binding protein / ACh-binding protein / AchBP


分子量: 23862.523 Da / 分子数: 10 / 由来タイプ: 組換発現 / 由来: (組換発現) Lymnaea stagnalis (無脊椎動物)
発現宿主: Spodoptera frugiperda (ツマジロクサヨトウ)
株 (発現宿主): Sf9 / 参照: UniProt: P58154
#2: 化合物
ChemComp-09O / 1-(pyridin-3-yl)-1,4-diazepane / 1-(3-ピリジル)ヘキサヒドロ-1H-1,4-ジアゼピン


分子量: 177.246 Da / 分子数: 10 / 由来タイプ: 合成 / : C10H15N3
#3: 化合物
ChemComp-SO4 / SULFATE ION / 硫酸ジアニオン


分子量: 96.063 Da / 分子数: 6 / 由来タイプ: 合成 / : SO4
#4: 糖 ChemComp-NAG / 2-acetamido-2-deoxy-beta-D-glucopyranose / N-acetyl-beta-D-glucosamine / 2-acetamido-2-deoxy-beta-D-glucose / 2-acetamido-2-deoxy-D-glucose / 2-acetamido-2-deoxy-glucose / N-ACETYL-D-GLUCOSAMINE / N-アセチル-β-D-グルコサミン


タイプ: D-saccharide, beta linking / 分子量: 221.208 Da / 分子数: 1 / 由来タイプ: 組換発現 / : C8H15NO6
識別子タイププログラム
DGlcpNAcbCONDENSED IUPAC CARBOHYDRATE SYMBOLGMML 1.0
N-acetyl-b-D-glucopyranosamineCOMMON NAMEGMML 1.0
b-D-GlcpNAcIUPAC CARBOHYDRATE SYMBOLPDB-CARE 1.0
GlcNAcSNFG CARBOHYDRATE SYMBOLGMML 1.0
#5: 水 ChemComp-HOH / water


分子量: 18.015 Da / 分子数: 525 / 由来タイプ: 天然 / : H2O

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実験情報

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実験

実験手法: X線回折 / 使用した結晶の数: 1

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試料調製

結晶マシュー密度: 2.15 Å3/Da / 溶媒含有率: 42.67 %
結晶化温度: 293 K / pH: 8
詳細: 50mM Tris, 1.9M Ammonium sulfate, 1% PEG 400, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K

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データ収集

回折平均測定温度: 100 K
放射光源由来: シンクロトロン / サイト: ESRF / ビームライン: ID14-1 / 波長: 0.933
検出器タイプ: ADSC QUANTUM 210 / 検出器: CCD / 日付: 2010年1月1日
放射プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 0.933 Å / 相対比: 1
反射解像度: 2.35→44.88 Å / Num. obs: 83502 / % possible obs: 97.1 % / 冗長度: 3 % / Biso Wilson estimate: 23 Å2 / Rmerge(I) obs: 0.083 / Rsym value: 0.083 / Net I/σ(I): 9.1
反射 シェル解像度: 2.35→2.48 Å / 冗長度: 2.7 % / Rmerge(I) obs: 0.268 / Mean I/σ(I) obs: 2.9 / Rsym value: 0.268 / % possible all: 88.6

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解析

ソフトウェア
名称バージョン分類NB
SCALA3.3.9データスケーリング
PHENIX1.6.4_486精密化
PDB_EXTRACT3.1データ抽出
MOSFLMデータ削減
PHASER位相決定
精密化構造決定の手法: 分子置換
開始モデル: PDB ENTRY 1UW6: PENTAMER, CHAIN A-E
解像度: 2.35→44.88 Å / Occupancy max: 1 / Occupancy min: 0.5 / SU ML: 0.31 / Isotropic thermal model: Restrained / σ(F): 1.4 / 位相誤差: 23.75 / 立体化学のターゲット値: MLHL
Rfactor反射数%反射
Rfree0.258 1646 1.97 %
Rwork0.205 --
obs0.206 83459 96.5 %
all-86107 -
溶媒の処理減衰半径: 0.95 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL / Bsol: 21.75 Å2 / ksol: 0.36 e/Å3
原子変位パラメータBiso mean: 27.37 Å2
Baniso -1Baniso -2Baniso -3
1-4.5502 Å2-0 Å2-0 Å2
2---2.705 Å2-0 Å2
3----1.8452 Å2
精密化ステップサイクル: LAST / 解像度: 2.35→44.88 Å
タンパク質核酸リガンド溶媒全体
原子数16172 0 174 525 16871
拘束条件
Refine-IDタイプDev ideal
X-RAY DIFFRACTIONf_bond_d0.00716740
X-RAY DIFFRACTIONf_angle_d1.0122794
X-RAY DIFFRACTIONf_dihedral_angle_d13.4826226
X-RAY DIFFRACTIONf_chiral_restr0.0622587
X-RAY DIFFRACTIONf_plane_restr0.0042926
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-IDRefine-IDタイプRms dev position (Å)
11A104X-RAY DIFFRACTIONPOSITIONAL
12B104X-RAY DIFFRACTIONPOSITIONAL0.036
13C104X-RAY DIFFRACTIONPOSITIONAL0.034
14D104X-RAY DIFFRACTIONPOSITIONAL0.037
15E104X-RAY DIFFRACTIONPOSITIONAL0.039
16F104X-RAY DIFFRACTIONPOSITIONAL0.031
17G104X-RAY DIFFRACTIONPOSITIONAL0.036
18H104X-RAY DIFFRACTIONPOSITIONAL0.032
19I104X-RAY DIFFRACTIONPOSITIONAL0.036
110J104X-RAY DIFFRACTIONPOSITIONAL0.034
21A37X-RAY DIFFRACTIONPOSITIONAL
22B37X-RAY DIFFRACTIONPOSITIONAL0.044
23C37X-RAY DIFFRACTIONPOSITIONAL0.044
24D37X-RAY DIFFRACTIONPOSITIONAL0.035
25E37X-RAY DIFFRACTIONPOSITIONAL0.037
26F37X-RAY DIFFRACTIONPOSITIONAL0.031
27G37X-RAY DIFFRACTIONPOSITIONAL0.045
28H37X-RAY DIFFRACTIONPOSITIONAL0.035
29I37X-RAY DIFFRACTIONPOSITIONAL0.041
210J37X-RAY DIFFRACTIONPOSITIONAL0.033
31A129X-RAY DIFFRACTIONPOSITIONAL
32B129X-RAY DIFFRACTIONPOSITIONAL0.045
33C129X-RAY DIFFRACTIONPOSITIONAL0.05
34D129X-RAY DIFFRACTIONPOSITIONAL0.039
35E129X-RAY DIFFRACTIONPOSITIONAL0.047
36F129X-RAY DIFFRACTIONPOSITIONAL0.036
37G129X-RAY DIFFRACTIONPOSITIONAL0.055
38H129X-RAY DIFFRACTIONPOSITIONAL0.043
39I129X-RAY DIFFRACTIONPOSITIONAL0.044
310J129X-RAY DIFFRACTIONPOSITIONAL0.043
41A9X-RAY DIFFRACTIONPOSITIONAL
42B9X-RAY DIFFRACTIONPOSITIONAL0.067
43C9X-RAY DIFFRACTIONPOSITIONAL0.024
44D9X-RAY DIFFRACTIONPOSITIONAL0.022
45E9X-RAY DIFFRACTIONPOSITIONAL0.026
46F9X-RAY DIFFRACTIONPOSITIONAL0.041
47G9X-RAY DIFFRACTIONPOSITIONAL0.042
48H9X-RAY DIFFRACTIONPOSITIONAL0.044
49I9X-RAY DIFFRACTIONPOSITIONAL0.04
51A205X-RAY DIFFRACTIONPOSITIONAL
52B205X-RAY DIFFRACTIONPOSITIONAL0.046
53C205X-RAY DIFFRACTIONPOSITIONAL0.045
54D205X-RAY DIFFRACTIONPOSITIONAL0.038
55E205X-RAY DIFFRACTIONPOSITIONAL0.047
56F205X-RAY DIFFRACTIONPOSITIONAL0.046
57G205X-RAY DIFFRACTIONPOSITIONAL0.047
58H205X-RAY DIFFRACTIONPOSITIONAL0.045
59I205X-RAY DIFFRACTIONPOSITIONAL0.04
510J205X-RAY DIFFRACTIONPOSITIONAL0.051
61A463X-RAY DIFFRACTIONPOSITIONAL
62B463X-RAY DIFFRACTIONPOSITIONAL0.046
63C463X-RAY DIFFRACTIONPOSITIONAL0.077
64D455X-RAY DIFFRACTIONPOSITIONAL0.047
65E455X-RAY DIFFRACTIONPOSITIONAL0.047
66F463X-RAY DIFFRACTIONPOSITIONAL0.046
67G463X-RAY DIFFRACTIONPOSITIONAL0.049
68H463X-RAY DIFFRACTIONPOSITIONAL0.047
69I463X-RAY DIFFRACTIONPOSITIONAL0.048
610J463X-RAY DIFFRACTIONPOSITIONAL0.05
71A9X-RAY DIFFRACTIONPOSITIONAL
72B9X-RAY DIFFRACTIONPOSITIONAL0.034
73C9X-RAY DIFFRACTIONPOSITIONAL0.048
74D9X-RAY DIFFRACTIONPOSITIONAL0.031
75E9X-RAY DIFFRACTIONPOSITIONAL0.052
76G9X-RAY DIFFRACTIONPOSITIONAL0.035
77H9X-RAY DIFFRACTIONPOSITIONAL0.042
78I9X-RAY DIFFRACTIONPOSITIONAL0.014
79J9X-RAY DIFFRACTIONPOSITIONAL0.04
81A162X-RAY DIFFRACTIONPOSITIONAL
82B162X-RAY DIFFRACTIONPOSITIONAL0.046
83C162X-RAY DIFFRACTIONPOSITIONAL0.05
84D162X-RAY DIFFRACTIONPOSITIONAL0.047
85E162X-RAY DIFFRACTIONPOSITIONAL0.04
86F162X-RAY DIFFRACTIONPOSITIONAL0.042
87G162X-RAY DIFFRACTIONPOSITIONAL0.048
88H162X-RAY DIFFRACTIONPOSITIONAL0.045
89I162X-RAY DIFFRACTIONPOSITIONAL0.046
810J162X-RAY DIFFRACTIONPOSITIONAL0.048
91A15X-RAY DIFFRACTIONPOSITIONAL
92B15X-RAY DIFFRACTIONPOSITIONAL0.037
93D15X-RAY DIFFRACTIONPOSITIONAL0.057
94E15X-RAY DIFFRACTIONPOSITIONAL0.055
95F15X-RAY DIFFRACTIONPOSITIONAL0.067
96G15X-RAY DIFFRACTIONPOSITIONAL0.1
97H15X-RAY DIFFRACTIONPOSITIONAL0.034
98I15X-RAY DIFFRACTIONPOSITIONAL0.086
99J15X-RAY DIFFRACTIONPOSITIONAL0.077
101A56X-RAY DIFFRACTIONPOSITIONAL
102B56X-RAY DIFFRACTIONPOSITIONAL0.041
103C56X-RAY DIFFRACTIONPOSITIONAL0.039
104D56X-RAY DIFFRACTIONPOSITIONAL0.041
105E56X-RAY DIFFRACTIONPOSITIONAL0.039
106F56X-RAY DIFFRACTIONPOSITIONAL0.042
107G56X-RAY DIFFRACTIONPOSITIONAL0.044
108H56X-RAY DIFFRACTIONPOSITIONAL0.041
109I56X-RAY DIFFRACTIONPOSITIONAL0.048
1010J56X-RAY DIFFRACTIONPOSITIONAL0.037
111A11X-RAY DIFFRACTIONPOSITIONAL
112B11X-RAY DIFFRACTIONPOSITIONAL0.104
113C11X-RAY DIFFRACTIONPOSITIONAL0.041
114D11X-RAY DIFFRACTIONPOSITIONAL0.108
115E11X-RAY DIFFRACTIONPOSITIONAL0.078
116F11X-RAY DIFFRACTIONPOSITIONAL0.056
117G11X-RAY DIFFRACTIONPOSITIONAL0.034
118H11X-RAY DIFFRACTIONPOSITIONAL0.069
119J11X-RAY DIFFRACTIONPOSITIONAL0.045
121A150X-RAY DIFFRACTIONPOSITIONAL
122B150X-RAY DIFFRACTIONPOSITIONAL0.052
123C150X-RAY DIFFRACTIONPOSITIONAL0.056
124D150X-RAY DIFFRACTIONPOSITIONAL0.048
125E150X-RAY DIFFRACTIONPOSITIONAL0.046
126F150X-RAY DIFFRACTIONPOSITIONAL0.048
127G150X-RAY DIFFRACTIONPOSITIONAL0.043
128H150X-RAY DIFFRACTIONPOSITIONAL0.043
129I150X-RAY DIFFRACTIONPOSITIONAL0.051
1210J150X-RAY DIFFRACTIONPOSITIONAL0.046
131A9X-RAY DIFFRACTIONPOSITIONAL
132B9X-RAY DIFFRACTIONPOSITIONAL0.059
133C9X-RAY DIFFRACTIONPOSITIONAL0.028
134D9X-RAY DIFFRACTIONPOSITIONAL0.018
135E9X-RAY DIFFRACTIONPOSITIONAL0.027
136G9X-RAY DIFFRACTIONPOSITIONAL0.03
137H9X-RAY DIFFRACTIONPOSITIONAL0.042
138I9X-RAY DIFFRACTIONPOSITIONAL0.082
139J9X-RAY DIFFRACTIONPOSITIONAL0.089
141A119X-RAY DIFFRACTIONPOSITIONAL
142B119X-RAY DIFFRACTIONPOSITIONAL0.045
143C119X-RAY DIFFRACTIONPOSITIONAL0.045
144D119X-RAY DIFFRACTIONPOSITIONAL0.047
145E119X-RAY DIFFRACTIONPOSITIONAL0.043
146F119X-RAY DIFFRACTIONPOSITIONAL0.046
147G119X-RAY DIFFRACTIONPOSITIONAL0.043
148H119X-RAY DIFFRACTIONPOSITIONAL0.044
149I119X-RAY DIFFRACTIONPOSITIONAL0.044
1410J119X-RAY DIFFRACTIONPOSITIONAL0.045
LS精密化 シェル
解像度 (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
2.35-2.41910.33561140.2665949X-RAY DIFFRACTION85
2.4191-2.49720.35691230.266418X-RAY DIFFRACTION92
2.4972-2.58650.341500.24526605X-RAY DIFFRACTION95
2.5865-2.690.2771390.23556770X-RAY DIFFRACTION97
2.69-2.81240.28471240.21116934X-RAY DIFFRACTION99
2.8124-2.96070.2641270.21396943X-RAY DIFFRACTION99
2.9607-3.14610.29061450.20896981X-RAY DIFFRACTION99
3.1461-3.38890.27841310.20516986X-RAY DIFFRACTION99
3.3889-3.72980.22731270.19446982X-RAY DIFFRACTION99
3.7298-4.26920.22891480.17677073X-RAY DIFFRACTION99
4.2692-5.37730.20061710.16756999X-RAY DIFFRACTION99
5.3773-44.88610.23861470.20777173X-RAY DIFFRACTION96
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
10.0129-0.0040.01350.0049-0.00510.01450.2771-0.02680.0827-0.1012-0.04060.12930.1813-0.31430.00030.2059-0.0920.04480.2017-0.00280.1276-33.9973-10.06439.9851
20.0059-0.0046-0.01080.02290.01420.02170.2270.28980.03690.1695-0.0878-0.1539-0.1137-0.10420.00090.33610.0347-0.00680.2771-0.14230.2562-3.0084-10.42079.7858
30.50490.34840.02560.3218-0.06860.093-0.28290.3052-0.09990.04480.1735-0.0976-0.07880.11010.01090.45680.1250.04450.38090.16520.08336.8651-6.238338.8057
40.0893-0.0412-0.09450.02360.04030.1024-0.4166-0.0509-0.07710.0669-0.5799-0.1714-0.0594-0.1418-0.00520.15690.0483-0.14960.3059-0.11390.4439-17.98-3.573356.8447
50.03320.03950.06470.05040.07090.1360.2085-0.04770.07540.14040.3435-0.082-0.2007-0.02510.00090.2391-0.05630.01530.3366-0.07820.0943-43.3885-6.002539.217
60.0431-0.08960.09730.187-0.19580.27010.3248-0.1347-0.09450.03840.1966-0.23710.04920.06580.00190.9865-0.10020.22830.34720.02640.3069-33.230348.344976.1452
70.1749-0.10490.21250.8655-0.62610.5680.06760.07450.32840.0407-0.2286-0.4084-0.03170.2434-0.01120.3162-0.1358-0.02550.2087-0.01150.1432-32.164444.1822106.8452
80.75650.3476-0.13180.16880.00780.5274-0.0282-0.04960.0127-0.0317-0.06080.0411-0.0036-0.103-0.23770.53690.11770.23180.7083-0.58080.8323-60.965142.5262117.422
90.08680.0893-0.21920.26330.03910.96160.0183-0.00710.1736-0.0669-0.0367-0.143-0.00130.0022-0.07541.34120.0292-0.18830.0056-0.03580.4006-80.317245.999193.3713
100.5496-0.6036-0.02090.6743-0.06410.66040.1516-0.08830.1863-0.1780.1257-0.1388-0.1358-0.26010.33690.24630.03150.18180.32550.02020.149-63.321749.464967.7471
116.03791.88453.98216.87262.81073.01730.2273-0.7141-0.12411.53810.13610.27330.3698-0.51160.05330.14980.02410.0123-0.00010.03420.1609-26.4979-7.229115.0952
120.0921-0.6721-1.02636.96636.1052.0008-0.4984-0.137-0.3124-0.0747-0.28591.27770.2391-0.4435-0.77340.01330.03860.00940.13320.14350.296-5.9242-6.978218.132
133.9468-2.587-0.35915.7556-1.84071.0950.10610.4928-0.4605-0.76290.08690.6360.3407-0.13-0.05910.0722-0.0666-0.10840.19280.06960.1108-2.4009-4.193638.2744
140.70090.4902-0.09919.325-3.76321.5327-0.1357-0.1971-0.223-1.4296-0.2003-1.40410.48650.2805-0.09670.2341-0.07190.08310.12870.03740.1981-20.87-2.7747.8358
151.974-0.25130.20550.1489-0.06770.03640.13380.39660.00650.1809-0.2841-0.72910.0401-0.07440.00660.1678-0.1002-0.07160.11940.12950.2415-35.7877-4.695433.6662
164.51990.2842-0.330.47730.11620.06530.1497-0.52690.42990.99870.09810.15150.1070.0375-0.00060.2952-0.0296-0.04910.02680.03210.3075-41.797145.842679.4105
171.75570.74521.53361.22750.69471.5221-0.3505-0.1590.70390.2307-0.32481.0584-0.3055-0.2287-0.04060.18070.021-0.05950.0137-0.03590.2841-38.019943.035999.45
180.5308-0.1572-0.42850.69070.54710.6331-0.22150.524-0.2394-0.9798-0.17170.2541-1.3354-0.20930.00550.2464-0.0234-0.05940.0994-0.13080.3274-56.120741.5947109.2987
197.3416-2.08271.88550.598-0.50950.55790.47140.34550.8803-0.1122-0.0305-0.5323-0.22230.2979-0.04280.4198-0.02290.04650.0708-0.2820.2032-71.294243.595595.165
200.584-0.5145-0.0960.7643-1.04994.1459-0.2372-0.28810.815-0.0772-0.0336-0.4528-0.35420.5973-0.13980.10960.0458-0.08270.0687-0.13280.2114-62.760646.154176.6269
211.38610.39181.18620.39220.26781.25610.3459-0.0538-0.2749-0.05640.0565-0.04240.268-0.07240.10460.1787-0.0015-0.07280.01920.03260.204-11.5163-0.901710.9182
220.5391-0.94250.69141.6495-1.21923.0474-0.0933-0.1995-0.1020.21980.29390.0991-0.161-0.5367-0.0980.23690.1424-0.02720.15520.03980.00771.94341.696330.1766
230.3934-0.5060.57520.8526-1.21081.94-0.26420.37-0.2448-0.119-0.1107-0.25280.2381-0.0652-0.01650.0574-0.1028-0.00850.26030.12210.2583-12.63354.460948.5286
241.0671.37311.39563.29820.67022.65330.12070.1779-0.3352-0.41570.33350.16180.50110.45860.02680.06720.0108-0.0470.15760.02880.1-34.88783.359440.9363
252.1054-0.8198-1.90910.82151.10012.6739-0.2403-0.2703-0.37310.466-0.1206-0.03220.43880.3774-0.0660.2179-0.08080.05820.1190.02580.0667-34.19070.183117.6193
262.818-1.1623-0.08361.34990.03090.0026-0.23-0.25060.16940.15780.21420.42780.1345-0.0554-0.09660.0747-0.06020.10950.09860.0060.1663-55.59139.937271.5383
271.1581.9565-0.08453.7464-0.61170.50740.2263-0.43790.0312-0.14550.07770.1432-0.4177-0.25640.13530.278-0.0627-0.03780.3160.05610.0057-35.316538.208583.572
280.06110.0268-0.0160.05450.03230.05270.5931-0.08460.1130.1384-0.27490.21840.1649-0.18990.00040.35450.04590.03540.3594-0.22970.3297-40.967935.1095106.2375
290.2205-0.48660.08822.2844-2.03912.8407-0.22110.3791-0.15880.261-0.1762-0.62440.0002-0.0729-0.17720.56930.07050.16710.1849-0.17450.2624-64.524434.7515107.9555
300.0448-0.07030.10130.1145-0.1540.2518-0.1762-0.1514-0.10550.68330.29960.1902-0.6035-0.0390.00570.43410.03070.00630.1062-0.02350.1925-73.724937.788386.2612
310.3766-0.536-0.31760.82930.64420.73770.1092-0.05250.0555-0.2523-0.0413-0.0757-0.31350.26520.02710.2113-0.04070.00970.1370.12010.0952-18.489521.54654.2608
320.0786-0.02870.23740.61150.04371.19880.0538-0.031-0.03850.17430.13220.0242-0.20850.29710.0810.07320.00450.05870.14980.08690.13643.220223.461119.1995
330.82380.4166-0.12931.5539-1.14070.87430.0611-0.16150.0890.48790.0080.1628-0.54630.02860.0840.1794-0.0285-0.02730.10430.00410.0619-4.612727.115744.0424
340.8920.46410.00141.00950.05250.21640.0723-0.29530.356-0.2542-0.12780.39770.0024-0.02010.00350.05920.0206-0.00760.09440.01670.1126-31.140727.239844.8118
350.394-0.3058-0.31920.29880.02931.0407-0.07130.09480.0586-0.10440.05840.0202-0.3676-0.28-0.02480.0779-0.05-0.00310.05740.04860.1222-39.771123.84420.1536
360.4995-0.29120.22510.3530.04210.24610.03060.1938-0.25740.3383-0.06350.3136-0.1760.0938-0.02410.2255-0.00130.0140.0298-0.06580.1769-47.781717.163366.6623
370.26790.0413-0.08781.2296-0.03610.2357-0.0684-0.0994-0.184-0.24560.03950.00840.04290.0526-0.00040.14260.0507-0.08790.04470.0050.2479-31.301714.285787.387
380.5366-0.2271-0.08160.436-0.14630.121-0.2396-0.0056-0.0034-0.43930.0416-0.26290.12040.2568-0.00020.4924-0.03980.0219-0.0028-0.04450.278-46.369111.3596109.1474
390.2909-0.21350.16630.3675-0.21240.12840.176-0.01060.0115-0.2455-0.0932-0.3432-0.1819-0.2110.00010.3181-0.02970.14460.083-0.02580.1828-71.847212.3731101.4961
400.2461-0.0269-0.17160.3143-0.02530.32730.0037-0.03010.0277-0.16330.1033-0.00240.12090.0469-0.01220.1834-0.0006-0.0541-0.0353-0.05750.283-72.769115.969475.291
411.44950.91440.97011.37341.34981.3324-0.0835-0.1685-0.2890.4514-0.0167-0.1970.25030.0159-0.26840.18720.0079-0.0246-0.01330.05930.1717-9.857835.205310.3362
421.32050.9497-0.82811.83280.50291.5692-0.0456-0.1381-0.44140.3284-0.5125-0.31340.0087-0.4156-0.03440.5735-0.07260.00310.1347-0.00820.0514-1.441837.60927.7796
430.1857-0.230.09580.6712-0.53650.5016-0.0338-0.068-0.2244-0.0937-0.24650.0758-0.0393-0.1153-0.18490.06420.10410.00570.30790.06190.151-15.995639.636741.0453
441.08542.0545-0.43063.8892-0.81140.3202-0.2352-0.0748-0.3129-0.449-0.0704-0.365-0.0687-0.1139-0.0540.27330.0174-0.00320.33670.00930.1142-33.58238.348731.8367
450.24110.30850.45150.49040.91962.0693-0.3406-0.0935-0.3028-0.1014-0.0988-0.2073-0.56110.2106-0.03850.3135-0.03870.06030.0620.06080.2742-29.520135.636712.7931
462.89232.0693-0.12411.7135-0.40160.42560.2692-0.36640.14610.0098-0.007-0.1564-0.0036-0.23170.02660.06540.047-0.03440.1610.12640.423-58.17533.850670.0518
470.10530.01780.00830.03760.02310.01410.21220.09930.0501-0.4287-0.04640.740.07060.22710.00120.0989-0.0128-0.03020.2931-0.05230.3267-39.56572.743877.5791
480.4890.64070.0273.5133-2.36594.4688-0.74690.3409-0.0586-0.0425-0.4468-0.189-0.14630.2805-0.20130.6098-0.032-0.03420.3705-0.21050.3529-41.18380.064197.2036
491.1861-0.72481.58220.4525-0.8333.9160.32340.0971-0.22730.24040.11450.32540.09990.02110.20430.43880.14970.22090.0228-0.0040.3066-60.2645-0.435101.4236
500.03560.0147-0.00110.0285-0.0030.00010.0217-0.46270.0929-0.07760.34220.1481-0.34790.45360.00080.1779-0.03070.04020.1387-0.03820.2786-70.87421.836285.0248
514.8686-0.31860.43181.06920.36510.29420.31770.143-0.148-0.623-0.04110.1045-0.0281-0.08210.03160.29750.0071-0.03480.07170.11660.1188-25.3392-7.6314.5025
525.23423.7702-3.2393.0028-3.88231.9998-0.66551.1525-0.2576-0.4052-0.34510.04640.50990.9019-0.74140.16910.0648-0.16560.20450.02480.3384.5024-6.289615.8485
533.6961.5371-0.60740.994-1.28193.09070.17060.0649-0.92590.0822-0.2556-0.0530.890.5043-0.08980.2214-0.0403-0.0780.24520.02880.14772.8532-1.756847.2969
542.9261-0.51220.4270.7221-0.10320.61010.4994-0.6882-0.8759-0.17490.3843-0.10030.3895-0.0869-0.01850.0661-0.0579-0.05820.16680.02990.2696-27.8424-0.516355.5965
551.7302-2.1018-1.80462.72492.66663.1946-0.2148-0.0179-0.71770.0263-0.15820.67660.785-0.106-0.26580.2146-0.0456-0.07290.03050.05770.2611-45.4156-4.160829.1901
561.0898-1.6906-1.32583.07193.22915.5420.12560.10510.6827-0.64490.2468-0.53870.1621.06360.24950.09640.0463-0.0050.2081-0.00730.2458-40.265746.091568.866
572.8170.62294.08610.39311.50999.0449-0.7551-0.29480.1472-0.4367-0.0821-0.0491-0.4690.4595-0.26380.3817-0.02320.1080.2158-0.03030.1597-27.503342.211897.6706
580.0647-0.03450.02710.1817-0.03480.02620.1243-0.6470.5030.01880.0179-0-0.5837-0.6744-0.00030.42250.045-0.09660.3801-0.2450.6-51.343539.3185118.6907
590.62930.48910.33310.41090.31960.2982-0.1611-0.07150.69980.3894-0.03120.8249-0.5428-0.3102-0.02870.31840.02210.08080.3922-0.08180.3815-78.968941.4579102.7053
604.3077-2.8522-3.31382.2642.52352.83880.2380.89390.6615-0.5866-0.05280.211-0.6611-0.31310.14390.2127-0.02690.00790.20070.07440.1844-72.216445.7171.6097
611.1847-0.1224-0.37021.5544-0.4990.6637-0.29590.1399-0.5282-0.1577-0.05510.28760.1458-0.0506-0.189-0.09470.1502-0.2528-0.17970.3974-0.4698-20.96859.78249.7085
621.05-0.52761.08492.3042-0.08441.18350.38580.1365-0.3822-0.3432-0.04-0.08630.19220.22340.9065-0.319-0.20130.2891-0.05880.2679-0.2532-1.230211.064219.8416
630.8847-1.1169-0.63871.36320.80911.08770.0126-0.02610.06770.00310.007-0.16030.12060.13220.00130.0419-0.049-0.01520.0850.02790.0816-5.010914.174541.4289
640.8636-0.58650.31921.981-0.19940.5786-0.1341-0.0405-0.09980.25730.07080.0756-0.06770.06320.0148-0.0786-0.0277-0.04110.113-0.00030.0071-27.045214.737644.762
650.4392-0.31560.69140.5088-0.47371.13010.1075-0.0907-0.1365-0.0497-0.0683-0.04910.0662-0.1311-0.0210.0257-0.0169-0.03940.14530.04770.073-36.929511.99325.191
660.6376-0.21540.04421.64020.12861.6824-0.0711-0.06540.0724-0.0038-0.0864-0.2204-0.2040.1773-0.2751-0.05140.0716-0.01310.0688-0.07840.0005-46.495328.820472.6204
670.4485-0.2887-0.5371.71780.83441.08670.1030.03920.05770.248-0.0149-0.2520.06610.04060.0010.04440.0217-0.06350.0619-0.02920.102-35.117526.223991.5847
681.7074-0.40690.55541.0105-0.48850.3103-0.182-0.00630.12110.42840.0781-0.09060.10850.1316-0.00010.28960.0186-0.0580.0495-0.01140.0476-49.890823.9756108.0495
690.65650.75670.33981.5687-0.68181.80460.13650.12970.04970.3444-0.0640.19080.3753-0.1758-0-0.0310.06550.1132-0.0646-0.1298-0.0193-70.354825.246299.0773
701.17570.3701-0.72161.28870.44271.19210.00690.03320.1133-0.25840.01410.28150.0579-0.051-0.00720.0677-0.0121-0.0312-0.0048-0.06430.0503-68.30528.179477.1311
710.0707-0.56640.42286.0516-2.5353.1729-0.08660.24020.0430.1209-0.3007-0.80520.10510.2644-0.1173-0.01710.0379-0.01730.09380.05350.1273-11.69533.60754.4253
720.1926-0.15680.95970.4531-0.16395.9738-0.1226-0.0358-0.254-0.0189-0.0377-0.3615-0.61990.7817-0.29860.0922-0.09120.0770.26330.03840.12873.773636.294724.3085
730.6631-0.4237-0.16050.91010.04640.07150.2153-0.00990.278-0.0976-0.2216-0.2712-0.16380.07580.00220.1186-0.02870.02180.17140.00750.066-10.972639.328544.9777
740.068-0.2343-0.04291.58640.52430.50160.06620.27110.07690.2637-0.86210.3909-0.1283-0.4579-0.02730.1250.0331-0.04540.267-0.04680.1811-35.691538.410237.9865
750.2695-0.08510.02530.07270.05280.23530.1339-0.23650.14240.0814-0.02740.0571-0.16780.06450.00760.13770.11260.02020.20860.00570.0459-35.878934.885312.6971
766.17623.3566-3.28021.8241-1.78291.7424-0.27220.3867-0.4739-0.191-0.06160.09670.1164-0.4123-0.4523-0.0320.0197-0.09590.22160.04590.2098-54.84295.365564.7682
770.240.0965-0.01890.7967-0.98872.2337-0.09780.2538-0.6263-0.46470.05370.25660.43070.4387-0.14130.2614-0.0492-0.04510.1753-0.05470.2397-33.40913.356379.1011
780.02870.02720.01250.04440.02380.0168-0.34360.135-0.8323-0.1120.11120.14810.1265-0.26210.00020.57370.18250.06240.29470.17840.6011-40.47550.0306103.6871
792.9172-1.7271.36741.9453-0.3290.89060.502-0.1898-0.23790.3982-0.34880.3980.35330.17530.11390.4442-0.02470.08810.2373-0.0858-0.011-66.2123-0.0524103.9412
800.1960.38510.01472.2061-0.06580.2199-0.2358-0.31430.1022-0.18520.47270.5717-0.1866-0.41630.01310.1050.0311-0.06060.17780.08160.1695-75.09943.164680.1957
810.0549-0.1190.15520.2552-0.34460.51160.01270.13990.07880.0644-0.1379-0.1263-0.01680.1757-0.00430.0369-0.0022-0.02590.10280.02990.0888-7.235714.76913.1231
820.5966-0.041-0.39660.45370.12510.6885-0.03240.1955-0.1090.0413-0.18110.03920.00170.2973-0.01080.0054-0.0511-0.01420.20290.04530.18668.559818.450830.1023
830.4758-0.0613-0.10230.3863-0.2950.61940.0026-0.31380.0930.21030.0682-0.072-0.2573-0.07790.28650.09390.0191-0.07190.1010.0508-0.1109-12.599821.897153.2008
840.30990.2441-0.5060.5884-0.20330.90510.0769-0.09390.0220.0430.0089-0.1062-0.0276-0.46390.04270.0240.0059-0.0120.24990.03470.0676-41.579920.112240.8357
850.6069-1.6468-0.23154.74961.15521.13710.1442-0.0256-0.1569-0.2104-0.02970.35160.1204-0.3511-0.34530.0245-0.00860.00360.11790.07610.0942-38.157115.90149.6887
860.94980.4206-0.64490.2544-0.20340.5368-0.10690.2576-0.1377-0.3242-0.0285-0.0196-0.0697-0.1141-0.00190.14430.00770.01260.0987-0.04840.1444-58.172724.376662.6171
870.92730.96060.01012.1014-0.81040.5976-0.24330.2326-0.222-0.30140.3308-0.41690.10490.2559-0.10030.1329-0.0109-0.00780.18-0.11370.1065-30.039922.260176.9261
880.0558-0.0346-0.11520.05510.00230.3831-0.0996-0.1522-0.11170.31840.2199-0.26990.44950.32090.00010.37920.1536-0.02990.3055-0.07360.2322-34.967818.11107.9104
890.68170.3805-0.37020.44350.05650.5161-0.0222-0.2188-0.06240.48-0.10020.08140.3104-0.2252-0.00550.34230.0688-0.02230.2020.03780.1516-66.340217.3962112.3902
901.2136-0.4094-0.37711.79991.17821.01890.04810.1089-0.1869-0.0316-0.3550.2774-0.0199-0.2107-0.14120.02540.0032-0.00950.07620.00740.142-80.655721.278684.5006
911.7836-0.1638-0.74020.3151-0.11560.4181-0.1170.3676-0.1436-0.09320.19050.1133-0.0063-0.3762-0.04660.0462-0.02050.00250.32150.0910.0479-30.526529.32923.5375
920.4955-0.61150.09612.4721-0.83650.3177-0.01010.0603-0.0784-0.0594-0.04290.09030.03850.09090.2229-0.07070.03220.05540.2278-0.01230.187-0.909829.37156.8288
930.1270.1327-0.01380.15-0.0890.4678-0.06130.48360.3270.00070.07870.1804-0.0250.52030.00460.2908-0.1517-0.05030.29170.00870.18245.237333.572335.8676
940.62190.45370.05123.8159-0.04180.00640.0118-0.23220.07480.68630.2442-0.06740.260.294-0.00370.16710.00180.04450.2162-0.0776-0.0147-21.082635.726350.3892
952.88942.96250.81196.57743.54332.30480.2389-0.7718-0.75880.4849-0.30050.1291-0.0906-0.2049-0.33420.12130.1312-0.08810.47060.03380.0972-43.292333.028430.5545
960.3743-0.53390.17271.3318-0.88720.80080.6562-0.17510.81530.2662-0.6513-0.6590.07921.1574-0.02220.39270.0729-0.0160.36220.00520.3142-36.23699.082768.9443
970.2346-0.143-0.02470.0920.04120.1520.1726-0.67040.56010.6787-0.1541-0.66190.14210.1490.00260.31280.1023-0.01510.34780.02310.2544-30.94345.045898.3704
980.27620.07390.11850.0715-0.0190.0991-0.14590.00981.11240.47410.14730.2556-0.1631-0.22890.0010.86210.10560.10040.33050.03850.2462-57.68623.2583111.965
990.0420.03050.01010.0389-0.01260.0956-0.1186-0.23880.71320.30230.02080.5098-0.1386-1.10120.00250.27950.03340.14050.3805-0.05850.5512-79.32316.153891.0751
1001.7608-1.71891.08322.5317-1.62831.049-0.07330.44760.0634-0.5358-0.26460.394-0.17070.448-0.10790.198-0.018-0.0840.2477-0.12990.1504-65.91639.832364.4024
1011.2126-0.521-0.76841.73540.28071.30390.18380.1565-0.0567-0.6057-0.06410.01620.316-0.2682-0.04180.2560.0124-0.05510.0510.05130.1052-20.951330.9055-2.9154
1020.6156-0.2708-0.12230.45360.53460.71940.2075-0.35030.15080.47880.06220.0215-0.35070.41540.06150.2102-0.00210.05410.17510.14560.02188.050732.79513.4089
1030.53640.2292-1.09920.4729-0.67092.35710.067-0.23810.1794-0.0419-0.18470.08180.380.4852-0.01840.15980.0152-0.04460.0939-0.02010.07911.151337.386345.793
1044.3511-1.1451-0.67623.4018-1.35730.8643-0.1094-0.48450.40570.65260.2001-0.1364-0.3119-0.1493-0.00760.11750.0089-0.05420.2406-0.02770.0563-32.452638.149449.6374
1052.51540.97281.48790.95910.75173.13760.30420.1039-0.68970.52650.3755-0.0209-0.3969-0.52620.10080.25690.02740.04940.1030.02370.214-46.058634.089119.3567
1060.8556-0.39490.67870.3999-0.37850.55780.16020.5892-0.5164-0.18840.0088-0.26960.20380.21440.00050.16820.0501-0.04420.1832-0.05650.2362-43.79137.836760.259
1070.0402-0.0613-0.02050.14460.08970.10580.1960.2896-0.1004-0.14240.2740.72670.050.0220.00160.38150.0565-0.16120.19580.02470.2954-25.38023.903288.1447
1080.08540.0025-0.08720.00610.0110.1089-0.5944-0.1082-0.22590.69830.1242-0.61350.56-0.0176-01.0010.08610.00140.12770.15470.3822-46.60680.4871114.1893
1090.0284-0.01810.06060.07610.06510.2880.2597-0.204-0.2669-0.4067-0.00150.14170.0115-0.18760.00850.7615-0.03510.27180.1558-0.10610.4312-77.96242.1136101.7788
1101.2906-0.09240.18940.5552-0.11340.66940.24420.24090.2959-0.4774-0.16080.36710.18990.2049-0.0380.15860.0915-0.08420.0505-0.0380.1807-76.32466.700568.6002
1112.2206-1.29890.39030.7602-0.22860.06890.06570.2736-0.33920.1505-0.14030.05890.08810.2291-0.02250.17610.0635-0.06330.25440.06010.0932-4.880316.5225-3.9208
1120.7679-0.7490.14020.7333-0.15190.09370.04810.97350.0791-0.0555-0.22790.0373-0.05990.38960.14450.0634-0.0551-0.10860.55270.12050.169615.623121.103229.8981
1132.61720.9708-0.19222.1217-0.86330.37020.3186-0.37670.0899-0.249-0.11590.22120.0621-0.1760.06140.17440.044-0.01830.17020.04020.0426-10.481525.425459.4961
1140.46430.6367-0.30781.2766-0.83040.61570.4746-0.87940.3810.7401-0.0230.8318-0.3608-0.11310.04140.3-0.0906-0.04710.3007-0.04670.2161-47.32423.35344.5665
1150.65130.9110.70532.54641.8961.4151-0.1116-0.28970.0752-0.2823-0.34650.0498-0.4181-0.4814-0.25150.5749-0.0817-0.2520.44190.18530.0914-43.863617.99825.1463
1161.497-0.90391.17241.5485-0.90621.599-0.11150.4812-0.41620.0679-0.5086-0.11070.59880.2873-0.07740.31390.11150.07430.1461-0.05040.1361-58.505822.805455.2058
1170.48350.31410.20390.21380.16980.2320.5975-0.78310.1069-0.4438-0.1597-0.46240.07290.29480.01520.36660.09460.14730.3808-0.02910.2731-23.514120.032473.9142
1182.84412.44291.96253.58391.63881.3556-0.1587-0.42670.80420.3736-0.34140.0309-0.0299-0.7487-0.10250.6380.1668-0.1980.2820.09580.2841-30.447514.7498113.0516
1190.0221-0.0119-0.00820.01370.00190.004-0.41170.65090.0310.4784-0.17270.13240.1027-0.66360.00180.7645-0.16180.22750.56520.0170.2086-70.194313.8817118.1223
1200.397-0.69610.0744.15273.6244.81810.15630.36690.0887-0.3786-0.39040.3311-0.62530.1154-0.16240.1618-0.01120.13120.1715-0.11420.2802-87.560718.875682.4495
1210.7948-1.09070.26762.2520.35460.73780.02070.01740.1177-0.00110.0176-0.2103-0.2916-0.0660.01480.1219-00.01480.16490.07650.0422-13.273325.4146-0.2048
1220.3070.1055-0.50270.5824-0.1320.81220.2161-0.03870.04410.19170.11170.5013-0.02390.24740.1286-0.0188-0.10740.00310.2238-0.00750.13688.570828.314722.1839
1230.67830.2248-0.06190.17430.24930.74670.0478-0.00010.26760.00020.00460.2354-0.331-0.09010.02780.1265-0.0234-0.04410.09920.0320.1308-6.397532.327649.6232
1240.44780.46520.06370.75570.00720.15360.0121-0.15950.1362-0.09360.07770.2447-0.0533-0.11140.0090.03160.03370.00670.20030.0610.1357-37.665731.639844.4218
1250.9271-0.3934-0.87311.53320.7782.12450.2466-0.18810.16970.23790.0139-0.1477-0.2038-0.34870.4193-0.0790.0519-0.15270.11470.0874-0.0431-41.800827.503413.4076
1261.04020.3174-0.23470.4833-0.10510.1618-0.04040.1459-0.17260.1944-0.093-0.07610.13060.0220.02270.13980.0450.04440.158-0.0052-0.0011-51.792413.565360.8339
1270.69990.14450.19820.34850.02390.69410.0446-0.0811-0.2770.0144-0.00910.06140.46090.176-0.04140.2080.0631-0.0770.1832-0.06270.1404-27.764810.614681.3899
1281.17810.5688-0.62980.5274-0.11190.4727-0.4755-0.3883-0.8219-0.48710.0496-0.69030.39040.0827-0.00730.50490.0375-0.04620.10620.12670.2762-39.94936.7536110.4334
1290.9576-0.27150.27850.13790.00910.1959-0.0617-0.2753-0.54920.03930.0659-0.24660.3932-0.19430.00740.5851-0.06860.15810.19870.0050.1714-71.66087.0836107.3244
1300.4130.13160.21870.4444-0.09980.26890.0450.0879-0.31980.2495-0.24730.17110.2008-0.1503-0.00070.1180.0028-0.01180.1226-0.01890.2036-78.92511.293976.8862
精密化 TLSグループ
IDRefine-IDRefine TLS-IDSelection details
1X-RAY DIFFRACTION1chain A and resid 1:2
2X-RAY DIFFRACTION2chain B and resid 1:2
3X-RAY DIFFRACTION3chain C and resid 1:2
4X-RAY DIFFRACTION4chain D and resid 1:2
5X-RAY DIFFRACTION5chain E and resid 1:2
6X-RAY DIFFRACTION6chain F and resid 1:2
7X-RAY DIFFRACTION7chain G and resid 1:2
8X-RAY DIFFRACTION8chain H and resid 1:2
9X-RAY DIFFRACTION9chain I and resid 1:2
10X-RAY DIFFRACTION10chain J and resid 1:2
11X-RAY DIFFRACTION11chain A and resid 4:12
12X-RAY DIFFRACTION12chain B and resid 4:12
13X-RAY DIFFRACTION13chain C and resid 4:12
14X-RAY DIFFRACTION14chain D and resid 4:12
15X-RAY DIFFRACTION15chain E and resid 4:12
16X-RAY DIFFRACTION16chain F and resid 4:12
17X-RAY DIFFRACTION17chain G and resid 4:12
18X-RAY DIFFRACTION18chain H and resid 4:12
19X-RAY DIFFRACTION19chain I and resid 4:12
20X-RAY DIFFRACTION20chain J and resid 4:12
21X-RAY DIFFRACTION21chain A and resid 16:20
22X-RAY DIFFRACTION22chain B and resid 16:20
23X-RAY DIFFRACTION23chain C and resid 16:20
24X-RAY DIFFRACTION24chain D and resid 16:20
25X-RAY DIFFRACTION25chain E and resid 16:20
26X-RAY DIFFRACTION26chain F and resid 16:20
27X-RAY DIFFRACTION27chain G and resid 16:20
28X-RAY DIFFRACTION28chain H and resid 16:20
29X-RAY DIFFRACTION29chain I and resid 16:20
30X-RAY DIFFRACTION30chain J and resid 16:20
31X-RAY DIFFRACTION31chain A and resid 26:42
32X-RAY DIFFRACTION32chain B and resid 26:42
33X-RAY DIFFRACTION33chain C and resid 26:42
34X-RAY DIFFRACTION34chain D and resid 26:42
35X-RAY DIFFRACTION35chain E and resid 26:42
36X-RAY DIFFRACTION36chain F and resid 26:42
37X-RAY DIFFRACTION37chain G and resid 26:42
38X-RAY DIFFRACTION38chain H and resid 26:42
39X-RAY DIFFRACTION39chain I and resid 26:42
40X-RAY DIFFRACTION40chain J and resid 26:42
41X-RAY DIFFRACTION41chain A and resid 45:47
42X-RAY DIFFRACTION42chain B and resid 45:47
43X-RAY DIFFRACTION43chain C and resid 45:47
44X-RAY DIFFRACTION44chain D and resid 45:47
45X-RAY DIFFRACTION45chain E and resid 45:47
46X-RAY DIFFRACTION46chain F and resid 45:47
47X-RAY DIFFRACTION47chain G and resid 45:47
48X-RAY DIFFRACTION48chain H and resid 45:47
49X-RAY DIFFRACTION49chain I and resid 45:47
50X-RAY DIFFRACTION50chain J and resid 45:47
51X-RAY DIFFRACTION51chain A and resid 62:67
52X-RAY DIFFRACTION52chain B and resid 62:67
53X-RAY DIFFRACTION53chain C and resid 62:67
54X-RAY DIFFRACTION54chain D and resid 62:67
55X-RAY DIFFRACTION55chain E and resid 62:67
56X-RAY DIFFRACTION56chain F and resid 62:67
57X-RAY DIFFRACTION57chain G and resid 62:67
58X-RAY DIFFRACTION58chain H and resid 62:67
59X-RAY DIFFRACTION59chain I and resid 62:67
60X-RAY DIFFRACTION60chain J and resid 62:67
61X-RAY DIFFRACTION61chain A and resid 70:119
62X-RAY DIFFRACTION62chain B and resid 70:119
63X-RAY DIFFRACTION63chain C and resid 70:119
64X-RAY DIFFRACTION64chain D and resid 70:119
65X-RAY DIFFRACTION65chain E and resid 70:119
66X-RAY DIFFRACTION66chain F and resid 70:119
67X-RAY DIFFRACTION67chain G and resid 70:119
68X-RAY DIFFRACTION68chain H and resid 70:119
69X-RAY DIFFRACTION69chain I and resid 70:119
70X-RAY DIFFRACTION70chain J and resid 70:119
71X-RAY DIFFRACTION71chain A and resid 121:128
72X-RAY DIFFRACTION72chain B and resid 121:128
73X-RAY DIFFRACTION73chain C and resid 121:128
74X-RAY DIFFRACTION74chain D and resid 121:128
75X-RAY DIFFRACTION75chain E and resid 121:128
76X-RAY DIFFRACTION76chain F and resid 121:128
77X-RAY DIFFRACTION77chain G and resid 121:128
78X-RAY DIFFRACTION78chain H and resid 121:128
79X-RAY DIFFRACTION79chain I and resid 121:128
80X-RAY DIFFRACTION80chain J and resid 121:128
81X-RAY DIFFRACTION81chain A and resid 133:152
82X-RAY DIFFRACTION82chain B and resid 133:152
83X-RAY DIFFRACTION83chain C and resid 133:152
84X-RAY DIFFRACTION84chain D and resid 133:152
85X-RAY DIFFRACTION85chain E and resid 133:152
86X-RAY DIFFRACTION86chain F and resid 133:152
87X-RAY DIFFRACTION87chain G and resid 133:152
88X-RAY DIFFRACTION88chain H and resid 133:152
89X-RAY DIFFRACTION89chain I and resid 133:152
90X-RAY DIFFRACTION90chain J and resid 133:152
91X-RAY DIFFRACTION91chain A and resid 164:169
92X-RAY DIFFRACTION92chain B and resid 164:169
93X-RAY DIFFRACTION93chain C and resid 164:169
94X-RAY DIFFRACTION94chain D and resid 164:169
95X-RAY DIFFRACTION95chain E and resid 164:169
96X-RAY DIFFRACTION96chain F and resid 164:169
97X-RAY DIFFRACTION97chain G and resid 164:169
98X-RAY DIFFRACTION98chain H and resid 164:169
99X-RAY DIFFRACTION99chain I and resid 164:169
100X-RAY DIFFRACTION100chain J and resid 164:169
101X-RAY DIFFRACTION101chain A and resid 171:177
102X-RAY DIFFRACTION102chain B and resid 171:177
103X-RAY DIFFRACTION103chain C and resid 171:177
104X-RAY DIFFRACTION104chain D and resid 171:177
105X-RAY DIFFRACTION105chain E and resid 171:177
106X-RAY DIFFRACTION106chain F and resid 171:177
107X-RAY DIFFRACTION107chain G and resid 171:177
108X-RAY DIFFRACTION108chain H and resid 171:177
109X-RAY DIFFRACTION109chain I and resid 171:177
110X-RAY DIFFRACTION110chain J and resid 171:177
111X-RAY DIFFRACTION111chain A and resid 179:183
112X-RAY DIFFRACTION112chain B and resid 179:183
113X-RAY DIFFRACTION113chain C and resid 179:183
114X-RAY DIFFRACTION114chain D and resid 179:183
115X-RAY DIFFRACTION115chain E and resid 179:183
116X-RAY DIFFRACTION116chain F and resid 179:183
117X-RAY DIFFRACTION117chain G and resid 179:183
118X-RAY DIFFRACTION118chain H and resid 179:183
119X-RAY DIFFRACTION119chain I and resid 179:183
120X-RAY DIFFRACTION120chain J and resid 179:183
121X-RAY DIFFRACTION121chain A and resid 191:204
122X-RAY DIFFRACTION122chain B and resid 191:204
123X-RAY DIFFRACTION123chain C and resid 191:204
124X-RAY DIFFRACTION124chain D and resid 191:204
125X-RAY DIFFRACTION125chain E and resid 191:204
126X-RAY DIFFRACTION126chain F and resid 191:204
127X-RAY DIFFRACTION127chain G and resid 191:204
128X-RAY DIFFRACTION128chain H and resid 191:204
129X-RAY DIFFRACTION129chain I and resid 191:204
130X-RAY DIFFRACTION130chain J and resid 191:204

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万見について

-
お知らせ

-
2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

-
2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月:コロナウイルスプロテーアーゼ

+
2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか? / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

+
2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例:em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

-
万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る