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- PDB-3ovo: REFINED X-RAY CRYSTAL STRUCTURES OF THE REACTIVE SITE MODIFIED OV... -
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Open data
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Basic information
Entry | Database: PDB / ID: 3ovo | ||||||
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Title | REFINED X-RAY CRYSTAL STRUCTURES OF THE REACTIVE SITE MODIFIED OVOMUCOID INHIBITOR THIRD DOMAINS FROM SILVER PHEASANT (OMSVP3(ASTERISK)) AND FROM JAPANESE QUAIL (OMJPQ3(ASTERISK)) | ||||||
![]() | OVOMUCOID THIRD DOMAIN CLEAVED RDI | ||||||
![]() | PROTEINASE INHIBITOR (KAZAL) | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() | ||||||
![]() | Musil, D. / Bode, W. | ||||||
![]() | ![]() Title: Refined X-ray crystal structures of the reactive site modified ovomucoid inhibitor third domains from silver pheasant (OMSVP3*) and from Japanese quail (OMJPQ3*). Authors: Musil, D. / Bode, W. / Huber, R. / Laskowski Jr., M. / Lin, T.Y. / Ardelt, W. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 21.7 KB | Display | ![]() |
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PDB format | ![]() | 13.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 375.1 KB | Display | ![]() |
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Full document | ![]() | 376.6 KB | Display | |
Data in XML | ![]() | 3 KB | Display | |
Data in CIF | ![]() | 4.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Atom site foot note | 1: RESIDUE PRO 12 IS A CIS PROLINE. 2: THE PEPTIDE BOND BETWEEN LYS 18 AND ASP 19 HAS BEEN HYDROLYZED. |
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Components
#1: Protein | Mass: 6067.842 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() |
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#2: Water | ChemComp-HOH / |
Compound details | THE PEPTIDE BOND BETWEEN LYS 18 AND ASP 19 HAS BEEN HYDROLYZED |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.79 Å3/Da / Density % sol: 31.44 % | |||||||||||||||
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Crystal grow | *PLUS Temperature: 20 ℃ / pH: 5 / Method: vapor diffusion, hanging drop | |||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Reflection | *PLUS Highest resolution: 1.55 Å / Num. obs: 5713 / % possible obs: 88.9 % / Num. measured all: 16719 / Rmerge(I) obs: 0.0962 |
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Processing
Software | Name: EREF / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Rfactor Rwork: 0.192 / Highest resolution: 1.55 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.55 Å
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Refine LS restraints |
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Refinement | *PLUS Lowest resolution: 6 Å / Num. reflection obs: 5239 / Rfactor obs: 0.192 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS Biso mean: 19.7 Å2 |