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Yorodumi- PDB-4ovo: REFINED X-RAY CRYSTAL STRUCTURES OF THE REACTIVE SITE MODIFIED OV... -
+Open data
-Basic information
Entry | Database: PDB / ID: 4ovo | ||||||
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Title | REFINED X-RAY CRYSTAL STRUCTURES OF THE REACTIVE SITE MODIFIED OVOMUCOID INHIBITOR THIRD DOMAINS FROM SILVER PHEASANT (OMSVP3(ASTERISK)) AND FROM JAPANESE QUAIL (OMJPQ3(ASTERISK)) | ||||||
Components | OVOMUCOID THIRD DOMAIN CLEAVED RDI | ||||||
Keywords | PROTEINASE INHIBITOR (KAZAL) | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Lophura nycthemera (Silver pheasant) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.5 Å | ||||||
Authors | Musil, D. / Bode, W. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1991 Title: Refined X-ray crystal structures of the reactive site modified ovomucoid inhibitor third domains from silver pheasant (OMSVP3*) and from Japanese quail (OMJPQ3*). Authors: Musil, D. / Bode, W. / Huber, R. / Laskowski Jr., M. / Lin, T.Y. / Ardelt, W. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 4ovo.cif.gz | 20.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb4ovo.ent.gz | 13.3 KB | Display | PDB format |
PDBx/mmJSON format | 4ovo.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 4ovo_validation.pdf.gz | 364.4 KB | Display | wwPDB validaton report |
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Full document | 4ovo_full_validation.pdf.gz | 364.5 KB | Display | |
Data in XML | 4ovo_validation.xml.gz | 2.9 KB | Display | |
Data in CIF | 4ovo_validation.cif.gz | 3.8 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ov/4ovo ftp://data.pdbj.org/pub/pdb/validation_reports/ov/4ovo | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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Atom site foot note | 1: RESIDUE PRO 12 IS A CIS PROLINE. 2: THE PEPTIDE BOND BETWEEN MET 18 AND GLU 19 HAS BEEN HYDROLYZED. |
-Components
#1: Protein | Mass: 6044.848 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Lophura nycthemera (Silver pheasant) / References: UniProt: P67954 |
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#2: Water | ChemComp-HOH / |
Compound details | THE PEPTIDE BOND BETWEEN MET 18 AND GLU 19 HAS BEEN HYDROLYZED |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.52 Å3/Da / Density % sol: 51.24 % | |||||||||||||||
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Crystal grow | *PLUS Temperature: 20 ℃ / pH: 6 / Method: vapor diffusion, hanging drop | |||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Reflection | *PLUS Highest resolution: 2.5 Å / Num. obs: 1947 / % possible obs: 82 % / Num. measured all: 5813 / Rmerge(I) obs: 0.0937 |
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-Processing
Software | Name: EREF / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Rfactor Rwork: 0.185 / Highest resolution: 2.5 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 2.5 Å
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Refine LS restraints |
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Refinement | *PLUS Lowest resolution: 6 Å / Num. reflection obs: 1741 / Rfactor obs: 0.185 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS Biso mean: 19.7 Å2 |